| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3316062 | 67 (1.190) | 3 (0.060) | 3/88 | NT | 5.1% | coding (1320/1488 nt) | nusA | transcription termination/antitermination L factor |
| ? | AP009048 | = 3316080 | 54 (1.110) | coding (1302/1488 nt) | nusA | transcription termination/antitermination L factor | |||||
TCAATGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3315988‑3316062‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgatctGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAACTGGCCGCCCGTGGCGTTTGTACGC < AP009048/3316080‑3316016 TCAATGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCA > 1:3340399/1‑69 ATGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATC < 1:2707978/71‑1 TGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCT < 1:700921/71‑1 GTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATC < 1:1300814/64‑1 TTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATC > 1:683665/1‑63 GAGATCTTCCAGCGTACAAACGCTACGGGCGGCCAGTTTGAATGCCAAATCACGATCT < 1:1375846/58‑1 GAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGA > 1:2540110/1‑55 GTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACG < 1:1273119/41‑1 GCCAGTTTGAATGCCAAATCACGATCTGCTGAACCTTGAAGGG < 1:4314462/43‑1 CAGTTTGAATGCCAAATCACGATCTGCTGAACCTTGAAGGGGT > 1:420045/1‑43 GTTTGAATGCCAAATCACGATCTGCTGAACCTTGAAGGGGTAGATCG > 1:2862715/1‑47 ACGATCTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAACTGGCCGCCCGTGGCGTTTGTACG < 1:2143717/71‑1 ACGATCTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAA > 1:702051/1‑47 CGATCTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAACTGGCCGCCCGTGGCGTTTGTACGC > 1:4216070/1‑71 CGATCTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAACTGGCCGCCCGTGGCGTTTGTACGC > 1:762047/1‑71 TCTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCA > 1:684665/1‑37 CTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAACTGGCCGCCCGTGGCGT > 1:4178894/1‑59 CTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAA > 1:5120337/1‑42 CTGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCA < 1:927292/40‑1 TCAATGCCCTGTTCGGCGAGATCTTCCAGCGTACAAACGCCACGGGCGGCCAGTTTGAATGCCAAATCACGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3315988‑3316062‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgatctGCTGAACCTTGAAGGGGTAGATCGTGATTTGGCATTCAAACTGGCCGCCCGTGGCGTTTGTACGC < AP009048/3316080‑3316016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |