| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3599312 = | NA (NA) | 4 (0.080) | 4/92 | NT | NA | intergenic (‑150/+34) | rrlA/alaT | 23S ribosomal RNA/tRNA‑Ala |
| ? | AP009048 | 3599345 = | NA (NA) | intergenic (‑183/+1) | rrlA/alaT | 23S ribosomal RNA/tRNA‑Ala | |||||
ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3599385‑3599312‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTA > AP009048/3599345‑3599414 ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:3318958/71‑1ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:1653273/71‑1ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:1656116/71‑1ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTC < 1:2869521/70‑1 CGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAG < 1:1620864/71‑1 CGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAG < 1:2050096/71‑1 CAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAG > 1:2717642/1‑71 TCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:898941/61‑1 ATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGA < 1:3763931/52‑1 TCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:674791/49‑1 CCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:1859074/48‑1 CGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGA > 1:3772989/1‑48 CGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGA > 1:3930602/1‑48 CACCATCTCTGTAGTGATTAAATAAAAAATACTTCA < 1:224251/36‑1 TCTCTGTAGTGATTAAATAAAAAATACTTCAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCT > 1:2837396/1‑71 TGTAGTGATTAAATAAAAAATACTTCAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGAC < 1:4902606/62‑1 GTGATTAAATAAAAAATACTTCAGAGATGGTGGAGCTATGCGGGATCGAACCGC > 1:3036112/1‑54 ATACTTCAGAGATGGTGGAGCTATGCGGGATCGAACCGCA > 1:1754545/1‑40 CAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGA < 1:4417350/71‑1 CAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTG < 1:697488/70‑1 CAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCT > 1:524844/1‑69 CAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGC > 1:4595280/1‑68 CAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCC > 1:2842675/1‑65 CAGAGATGGTGGAGCTATGCGGGATCGAACCGCAGAC > 1:2871468/1‑37 AGAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGG > 1:4111133/1‑55 GAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGC > 1:4366851/1‑71 GAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGC > 1:5078667/1‑71 GAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGC < 1:735304/71‑1 GAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAG < 1:2900006/70‑1 GAGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAG > 1:2477446/1‑53 AGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCT < 1:4202814/71‑1 AGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGC > 1:3760684/1‑70 AGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGA > 1:3089209/1‑68 AGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAACTGAGC > 1:4755430/1‑70 AGATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGC > 1:1033606/1‑54 GATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTg < 1:2616671/71‑2 ACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCTCTGTAGTGATTAAATAAAAAATACTTCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3599385‑3599312‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagATGGTGGAGCTATGCGGGATCGAACCGCAGACCTCCTGCGTGCAAAGCAGGCGCTCTCCCAGCTGAGCTA > AP009048/3599345‑3599414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |