| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4194825 | 65 (1.160) | 3 (0.060) | 3/92 | NT | 5.1% | coding (7/354 nt) | rplR | 50S ribosomal subunit protein L18 |
| ? | AP009048 | = 4194838 | 53 (1.040) | coding (20/354 nt) | rplR | 50S ribosomal subunit protein L18 | |||||
AAGGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4194753‑4194825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataCGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCG < AP009048/4194838‑4194773 AAGGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA > 1:1725450/1‑71 GGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA > 1:2408238/1‑69 GGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA > 1:5076323/1‑69 TTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGAT < 1:1240152/65‑1 TTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGA > 1:3987422/1‑64 ACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTACGGATACGAGCAGATT < 1:535205/70‑1 AGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATACGAGCAGATTTCTTATCCAT < 1:2307026/70‑1 GTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGG > 1:3742918/1‑43 GCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGG > 1:2470803/1‑41 AAGAAGTAAGGTAACACTATGGATACGAGCAGATTTCTTATC > 1:3451551/1‑42 GGATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCG < 1:3815489/71‑1 GGATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGG < 1:4646315/57‑1 GATACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTT < 1:1130581/54‑1 TACGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTC > 1:5076704/1‑67 AAGGGTGTTCGTTACGCCGACGAAGTCGTGCGTACCAAAGAGGCTAAGAAGAAGTAAGGTAACACTATGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4194753‑4194825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataCGAGCAGATTTCTTATCCATAGTGTTACCTTACTTCTTCTTAGCCTCTTTGGTACGCACGACTTCG < AP009048/4194838‑4194773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |