| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4357240 = | 63 (1.120) | 5 (0.100) | 5/90 | NT | 8.5% | intergenic (+205/‑22) | yjdJ/yjdK | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain/hypothetical protein |
| ? | AP009048 | 4357263 = | 52 (1.050) | coding (2/297 nt) | yjdK | hypothetical protein | |||||
TGATGGATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4357315‑4357240‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattaTGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTG > AP009048/4357263‑4357330 TGATGGATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAA < 1:5058591/71‑1TGATGGATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAA < 1:344036/71‑1 GATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATTACTCCTATCAATATT > 1:3502971/1‑70 GATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAATATTA < 1:2767734/71‑1 AAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAATATT < 1:954246/63‑1 AAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAATATT < 1:412857/63‑1 ACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAA > 1:1287184/1‑49 GAACTTGTTATTACCTTCCATAATATGACTCCTATCAATAT > 1:1247824/1‑41 CTTGTTTTTACCTTCCATAATATGACTCCTATCAATATTA > 1:4177630/1‑40 TTGTTTTTACCTTCCATAATATGACTCCTATCAATAT < 1:1312773/37‑1 TCCATAATATGACTACTATCAATATTATGGAAGGTAAAAACAAGTTCAATACTT < 1:3062530/54‑1 CCATAATATGACTCCTATCAATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGAT > 1:1045610/1‑70 CATAATATGACTCCTATCAATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTT > 1:2985177/1‑65 TAATATGACTCCTATCAATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTT > 1:3913062/1‑62 AATATGACTCCTATCAATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGT > 1:2457984/1‑56 ATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCT > 1:4440906/1‑69 ATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCT > 1:5049819/1‑69 TTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTG < 1:3000087/71‑1 TTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTA > 1:2870181/1‑49 TTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTT > 1:4941985/1‑44 TTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTT > 1:2334469/1‑43 TTATGGAAGGTAAAAACAAGTTCAATACTTATGTTG > 1:4508244/1‑36 ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTT > 1:3314071/1‑41 ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGT < 1:165474/35‑1 ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGT < 1:4840369/35‑1 TGATGGATAATCAAAAGAAACAACATAAGTATTGAACTTGTTTTTACCTTCCATAATATGACTCCTATCAATATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4357315‑4357240‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattaTGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTG > AP009048/4357263‑4357330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |