| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 225820 | NA (NA) | 9 (0.160) | 7/96 | NT | NA | noncoding (62/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 225831 | NA (NA) | noncoding (73/2904 nt) | rrlH | 23S ribosomal RNA | |||||
TCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/225748‑225820‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < AP009048/225831‑225763 TCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG > 1:2235626/1‑71TCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG > 1:2753697/1‑71 CGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:1187608/1‑71 CGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:1313028/1‑71 CGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:973829/1‑71 CGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:3589423/1‑71 CGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG > 1:1638362/1‑70 GGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT < 1:1566781/71‑1 GGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT > 1:1738399/1‑70 GGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:2490722/1‑69 GTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG > 1:372999/1‑64 AGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:4686125/1‑62 AGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:2511396/1‑62 GGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCG > 1:1903981/1‑67 GTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG > 1:4865159/1‑59 CGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCAC < 1:4164625/71‑1 GACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCAC > 1:1350603/1‑70 ACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCACGT < 1:2056515/71‑1 ACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAG < 1:2075125/66‑1 ACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC > 1:3481002/1‑52 GTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG < 1:3275807/44‑1 GTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG < 1:4616939/44‑1 GTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTG < 1:980073/44‑1 TACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT < 1:4240446/45‑1 ACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC < 1:4901611/41‑1 CGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGC < 1:1811466/40‑1 TGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAG < 1:2402667/46‑1 TGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCA > 1:3951489/1‑49 TGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCA > 1:4795545/1‑44 TGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCA > 1:4149579/1‑44 TGGCAGTCAGAGGCGATGAAGGACGTGCTTATCGCAGATTAGCA > 1:5355463/1‑44 ctCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGC > 1:2199616/3‑71 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCT > 1:4130941/1‑71 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCT < 1:3220428/71‑1 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCT < 1:2476692/71‑1 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGC > 1:2412579/1‑62 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTA > 1:4167823/1‑59 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTG > 1:500416/1‑57 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCG > 1:1984936/1‑55 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGC < 1:490727/47‑1 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAG > 1:453343/1‑44 GCTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACT > 1:3227688/1‑39 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:1133784/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:3269477/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:661398/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:4452446/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:4173765/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:1130711/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:3097755/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:3152126/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:3515008/71‑1 CTTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < 1:3215515/71‑1 TTATCGCAGATTAGCACGTCCTTCATCGGCTCTGACTGCCAGGGCATCCAC > 1:1832131/1‑51 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTa > 1:2459107/1‑69 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT > 1:3170820/1‑70 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCT > 1:2197628/1‑69 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACG < 1:2857361/59‑1 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTAC < 1:4176869/58‑1 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCC > 1:1314772/1‑49 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATACACCGTGTACGCTTAGTCGCTT > 1:3395176/1‑70 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCAT < 1:2579277/47‑1 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCAT < 1:801011/47‑1 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGG < 1:264811/43‑1 TTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAG > 1:3755405/1‑42 TCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/225748‑225820‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctTATCGCAGATTAGCACGTCCTTCATCGCCTCTGACTGCCAGGGCATCCACCGTGTACGCTTAGTCGCTT < AP009048/225831‑225763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |