| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 228057 = | NA (NA) | 7 (0.130) | 6/92 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 117 total aligned reads displayed.
CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > AP009048/228076‑228145 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:1016401/71‑1CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2703376/71‑1CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:5048455/71‑1CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:5342145/71‑1CACCTGCTCGCGCCGTAACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:4243746/71‑1 CCTGCTCTCTCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:4305804/1‑71 CCTGCTCGCGCCGTCACTCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:2263992/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:3926293/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:2389229/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:2532383/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1918472/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1188726/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:3556026/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:390208/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1480449/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:4183117/69‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTCGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1546099/1‑71 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:2352349/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:880024/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1123776/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:965482/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:959099/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:165057/1‑70 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:5194786/1‑71 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:4851722/1‑71 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:4581747/1‑68 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:3589475/67‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:2148349/69‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:3178706/69‑1 CGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:4722693/67‑1 GCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:406181/1‑62 GTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:2555582/1‑61 TCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2227129/56‑1 CGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:4442990/1‑55 TCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:5160933/1‑54 CGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:515247/1‑51 GCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:1753397/50‑1 GCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:22999/1‑49 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:1850627/48‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:5275897/46‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:4941693/46‑1 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:300830/46‑1 CAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:1368905/1‑47 CAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:3676121/1‑44 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:4982623/1‑46 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:4574801/1‑44 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:530453/1‑44 GCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:2784661/43‑1 GGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:1832982/1‑41 ATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:2777292/1‑35 ACCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGC > 1:5286261/1‑69 CCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTTACTGCGAGCGTGACGGCGCGAGCAG > 1:2759935/1‑71 CCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAG < 1:4461310/54‑1 TGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGT > 1:999408/1‑71 GATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGC < 1:5317052/60‑1 CAGGAGGTTAGTTCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:1740944/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:3535488/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:2928747/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:1236505/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:2247119/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:4467075/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGA > 1:492105/1‑54 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTG > 1:2004057/1‑37 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTCCGAGCGTGACGGCGCGAGCAGGTGCGAAAG > 1:2350797/1‑67 AGGAGGTTAGTGTAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT < 1:1981277/71‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:1601860/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:3330984/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:3372409/70‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:4713142/70‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGT < 1:4226908/59‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCA < 1:4471936/56‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT > 1:1319190/1‑43 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT > 1:4743926/1‑43 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAG > 1:1319361/1‑40 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAG > 1:5116051/1‑40 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAG > 1:408725/1‑40 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAG > 1:1648307/1‑40 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGC < 1:772709/37‑1 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGGGCGAGCAGGTGCGAAAGCAGGT > 1:4342280/1‑70 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTC < 1:5146341/71‑1 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAG > 1:4505551/1‑68 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCG > 1:2094827/1‑51 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGGGAGCGT < 1:345317/41‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2168230/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:200032/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2441961/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:2529261/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1905814/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:3087688/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:5187661/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:4025162/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:4453138/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTG < 1:4909559/42‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT < 1:3820973/41‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGC < 1:2425043/39‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGGGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:3090356/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:5311913/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:375256/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGT > 1:3123300/1‑56 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:4595093/1‑42 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > AP009048/228076‑228145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |