| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 315417 = | NA (NA) | 6 (0.120) | 5/84 | NT | NA | coding (607/867 nt) | insF | IS3 element protein InsF |
| ? | AP009048 | 315454 = | NA (NA) | coding (644/867 nt) | insF | IS3 element protein InsF | |||||
Only 100 of 213 total aligned reads displayed.
AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/315495‑315417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctgcGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA > AP009048/315454‑315523 atGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA < 1:1654976/69‑1AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:218204/1‑71AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:3195502/1‑71AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:13975/1‑71 GGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGAT < 1:3717451/71‑1 GCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:3119311/71‑1 GCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:4593743/71‑1 GCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGAT > 1:2063804/1‑70 GCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGAT > 1:2010584/1‑70 CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA < 1:3262403/71‑1 CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAA < 1:1859976/71‑1 CATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA > 1:2527772/1‑70 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC > 1:4419538/1‑71 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:3683895/71‑1 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:3883979/71‑1 TTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC > 1:2432984/1‑71 TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:1776670/1‑71 TATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT > 1:3907200/1‑71 ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:3836268/1‑71 ATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCT < 1:3228413/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC < 1:2688898/71‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:2994086/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:5060876/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:5355378/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:900003/70‑1 TCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:2474313/70‑1 CGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:2296446/1‑69 CGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:1006008/1‑62 AGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC > 1:3558411/1‑67 GCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC < 1:2645355/63‑1 GCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:4914786/62‑1 CAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATC > 1:1469193/1‑59 AACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:4033002/55‑1 CCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA > 1:3462161/1‑53 CTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:2225630/57‑1 TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG > 1:4138402/1‑56 TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:3879482/1‑53 TTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:2327464/1‑49 TTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA > 1:3600650/1‑49 GCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:1428876/47‑1 GCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:4932809/45‑1 CATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:3339336/1‑44 ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:2515001/41‑1 ATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGA > 1:2752816/1‑39 TACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTG < 1:3374526/45‑1 ACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:5325754/39‑1 TCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATA < 1:2792980/36‑1 CCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAAT > 1:91755/1‑37 TATGCCGCTTCAGTTGCGCCTGATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGC > 1:4971650/1‑57 CGCTTCAGTTGCGGCTGATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG < 1:5282914/71‑1 AGTTGCGCCTGATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATCCCTGCGTGGAA < 1:3438939/70‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT > 1:660657/1‑71 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:1538534/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:4274155/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCAT < 1:3923788/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGC < 1:1343094/62‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAA < 1:5090719/60‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTG < 1:815556/56‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGT‑‑AAAGCTTCTTTCATTC < 1:2095154/71‑1 ATAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTG < 1:1614458/52‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT > 1:4537338/1‑71 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT < 1:1574897/71‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT < 1:4105921/71‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTC < 1:2848952/64‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG < 1:2487044/53‑1 TAATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATA < 1:2601064/44‑1 TAATCTGCGTGAAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT > 1:5162049/1‑71 TAATCTACGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCG > 1:687638/1‑53 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC > 1:1072998/1‑71 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC > 1:1145834/1‑71 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC > 1:3972973/1‑71 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGC > 1:1184390/1‑60 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAA > 1:4204239/1‑44 AATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGC > 1:4425677/1‑36 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG > 1:1162698/1‑71 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG > 1:4735465/1‑71 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:4377008/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:5331923/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:4812352/70‑1 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGA > 1:1507209/1‑55 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAAT > 1:487255/1‑44 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAAT > 1:422840/1‑44 ATCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGA > 1:1978932/1‑40 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCG < 1:2462809/70‑1 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:2367361/69‑1 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAA > 1:5345848/1‑42 TCTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGA < 1:4694691/39‑1 CTGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGT > 1:3151072/1‑50 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCT > 1:1257622/1‑70 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTC < 1:3108296/67‑1 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATT > 1:1325049/1‑66 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTC < 1:4631466/63‑1 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGA < 1:291463/52‑1 TGCGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGG < 1:4467066/51‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA < 1:3701670/71‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA < 1:3871195/70‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA < 1:75505/70‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA > 1:87469/1‑70 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGA < 1:4543909/70‑1 CGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAA > 1:4298812/1‑38 AGGCATTATCGTAGCAGCAACCTTTTGCGCTCATACTTCCACGCAGATTATGCCGCTTCAGTTGCGCCTGATAATCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/315495‑315417‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataatctgcGTGGAAGTATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAA > AP009048/315454‑315523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |