| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 380893 | NA (NA) | 3 (0.060) | 3/88 | NT | NA | coding (364/411 nt) | insC | IS2 insertion element repressor InsA |
| ? | AP009048 | = 380919 | NA (NA) | coding (390/411 nt) coding (22/906 nt) |
insC insD |
IS2 insertion element repressor InsA IS2 insertion element transposase InsAB' |
|||||
Only 100 of 123 total aligned reads displayed.
AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/380817‑380893‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcaaTAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCC < AP009048/380919‑380850 AGAACTCCAGCGCCTGCTCGGCAATAAAACTATGGAAAATTAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:1651929/71‑1AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:4691688/71‑1AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:4657133/71‑1AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:4924718/71‑1AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:18588/71‑1AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:2725909/71‑1 GAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG > 1:4699654/1‑71 GAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG > 1:1323175/1‑71 AACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG > 1:1051977/1‑71 AACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG > 1:1977833/1‑71 AACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG > 1:2705383/1‑71 ACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:466064/1‑71 ACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG < 1:496187/71‑1 ACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:4920029/1‑71 ACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG < 1:3030672/69‑1 CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:464133/1‑70 CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:1775232/1‑70 CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:3699727/1‑70 CTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:334622/1‑70 CTCCAGCGCCTGCTCGGCAAAAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGC < 1:1039063/71‑1 TCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:4888127/66‑1 TCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATACGGAC < 1:4753058/66‑1 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCA > 1:1864811/1‑70 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCA > 1:1316946/1‑70 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCA > 1:4423863/1‑70 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCA > 1:1132427/1‑70 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCA > 1:531473/1‑70 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG > 1:3632869/1‑67 CCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATCGACGG > 1:4182545/1‑67 CAGCGCCTGCTCGTCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:3300704/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGATCTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:833435/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:3569266/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:3683886/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:2053438/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:1928118/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA > 1:512720/1‑70 CAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAACCCGTTGAATATGGACGGGCAA > 1:2185893/1‑70 AGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG < 1:2183878/65‑1 AGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG < 1:2177755/65‑1 TGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG < 1:1305451/58‑1 GCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG < 1:2151898/57‑1 GCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:3014850/56‑1 CTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGG > 1:4333448/1‑58 AAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:232168/46‑1 AAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG > 1:4992652/1‑47 AAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG > 1:2688922/1‑46 GATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACG < 1:4019798/42‑1 TGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:445535/39‑1 GGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGG < 1:1669240/40‑1 GGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGAC < 1:1439880/38‑1 AACTCCTCAAAGAAGCCGTTGAATATGGACGGGCA > 1:2648866/1‑35 TCCTCAAAGAAGCCGTTGAATATGGACGGGCAATAAGGGCGCGTGCGCTATCCACTT < 1:3729565/57‑1 CCTCAAAGAAGCCGTTGAATATGGACGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGC > 1:2118330/1‑62 CAAAGAAGCCGTTGAATATGGACGGGCAATAAGGGCGCGTGCGCTATCAACTTTT > 1:4473713/1‑55 CGGGCAATAAGTGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA < 1:1337516/71‑1 CGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCA < 1:969054/71‑1 CGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGA < 1:5294766/66‑1 CGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTG < 1:286818/62‑1 CGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGC < 1:953707/55‑1 CGGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGT‑CATATTCAACGGCTTCTTTGAGGAGTTCAT > 1:3817490/1‑71 GGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCAT < 1:1701467/71‑1 GGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCAT > 1:3367033/1‑71 GGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCAT > 1:5178466/1‑71 GGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCAT > 1:4906193/1‑71 GGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCAT > 1:4768320/1‑71 GGGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGT < 1:3548370/40‑1 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT > 1:4193712/1‑71 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT > 1:4562174/1‑71 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT > 1:4527262/1‑71 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT < 1:1921381/71‑1 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT > 1:1880324/1‑71 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT < 1:3958055/71‑1 GGCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTT < 1:3133930/59‑1 GCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTT < 1:4728080/71‑1 GCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTT > 1:2324004/1‑71 GCAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTT < 1:3479630/71‑1 CAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTT < 1:743753/71‑1 CAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTT > 1:3177818/1‑70 CAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAG < 1:5099611/60‑1 CAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTC < 1:5097211/45‑1 CAATAAGGGCGCGTGCGCTATCCACTTTTTTGCCAGTCCATATTC > 1:5039580/1‑45 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTC > 1:176621/1‑71 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTC > 1:701931/1‑71 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTC > 1:170383/1‑71 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTC > 1:1913777/1‑71 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT < 1:309330/68‑1 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTC < 1:4335059/65‑1 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTT < 1:875789/55‑1 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTC < 1:3572760/53‑1 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCT < 1:3967018/51‑1 AATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTC < 1:2655383/37‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCC < 1:1871494/71‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCC < 1:3444364/71‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATT < 1:1194508/67‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAG > 1:3255299/1‑58 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTG < 1:2157447/56‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTT < 1:2506599/54‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTT < 1:2546430/54‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTC < 1:3009114/43‑1 ATAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTC < 1:1173820/43‑1 AGAACTCCAGCGCCTGCTCGGCAAGAAAACGATGGAAAATGAACTCCTCAAAGAAGCCGTTGAATATGGACGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/380817‑380893‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcaaTAAGGGCGCGTGCGCTATCCACTTTTTTGCCCGTCCATATTCAACGGCTTCTTTGAGGAGTTCATTTTCC < AP009048/380919‑380850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |