| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1720804 | 47 (0.800) | 4 (0.080) | 3/88 | NT | 8.6% | coding (513/1110 nt) | ydhH | conserved hypothetical protein |
| ? | AP009048 | = 1720808 | 45 (0.890) | coding (509/1110 nt) | ydhH | conserved hypothetical protein | |||||
ATCCATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1720729‑1720804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggcgGCATCGCCAATCTGTCACTGCTCATTCCTGGGCAGCCGGTTGGGGGCTACGATACCGGTCCTGGTAACAT < AP009048/1720808‑1720739 ATCCATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGAT < 1:1281039/71‑1 CCATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTG > 1:3254699/1‑71 CATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGG < 1:963101/71‑1 CATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTG < 1:5135369/70‑1 ATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGC < 1:1554286/71‑1 ATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGC < 1:4208753/71‑1 TGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGA > 1:2316239/1‑59 GTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGC > 1:3083479/1‑63 AGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGGCATCGCCAATCT < 1:4200854/71‑1 AGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGGCATCGCCAATCT < 1:4542747/71‑1 AGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGC > 1:4916089/1‑57 GACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCG < 1:798810/56‑1 GTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTG < 1:144483/48‑1 GTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGA < 1:1875313/45‑1 CCCAGGAATGAGCAGTGACAGATTGGCGGCATCGC < 1:485885/35‑1 CAGGAATGAGCAGTGACAGATTGGCGGCATCGCCA > 1:2170225/1‑35 TTGGCGGGATCGCCAATCTGTCACTGCTCATTCCTGGGCAGCCGGTTGGGGGCTACGATACCGGTCCT > 1:1025395/1‑68 GGCGGCATCGCCAATCTGTCACTGCTCATTCCTGGGCAGCCGGTTGGGGGCTACGATACCGGTCCTGGTA < 1:5324313/70‑1 CGGCATCGCCAATCTGTCACTGCTCATTCCTGGGCAGCCGGTTGGGGGCTACGATACCGGTCCTGGTAACA < 1:4717246/71‑1 GGCATCGCCAATCTGTCACTGCTCATTCCTGGGCAGCCGGTTGGGGGCTACGATACCGGTCCTGGTAACAT < 1:5358880/71‑1 ATCCATCAGCATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/1720729‑1720804‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggcgGCATCGCCAATCTGTCACTGCTCATTCCTGGGCAGCCGGTTGGGGGCTACGATACCGGTCCTGGTAACAT < AP009048/1720808‑1720739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |