| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1736969 = | 61 (1.040) | 3 (0.070) | 3/80 | NT | 6.5% | intergenic (+5/‑123) | ydhO/sodB | predicted lipoprotein/superoxide dismutase, Fe |
| ? | AP009048 | 1736997 = | 38 (0.830) | intergenic (+33/‑95) | ydhO/sodB | predicted lipoprotein/superoxide dismutase, Fe | |||||
ATTGTGCGTATGGATAGGGTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACAGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1737047‑1736969‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacagggtaaGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGT > AP009048/1736997‑1737062 ATTGTGCGTATGGATAGGGTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAA > 1:3698007/1‑71 TGTGCGTATGGATAGGGTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAA > 1:2404878/1‑69 GTGCGTATGGATAGGGTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACA < 1:2289403/70‑1 ATGGATAGGGTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACAGGGTA > 1:1944048/1‑69 GTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAAC > 1:3800192/1‑54 ATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACAGGGTAA > 1:3515634/1‑54 AAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACA < 1:1919064/44‑1 TGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACAGGGTA < 1:101878/44‑1 TGTTGCCGTAACAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCAC > 1:3659016/1‑70 TGTTGCCGTAACAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATT < 1:5228616/49‑1 TGCCGTAACAACAGGGTAAGTTCATCTTTTGTCTCA > 1:2162059/1‑36 CAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGC < 1:1497085/67‑1 CAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCC < 1:3145022/46‑1 ACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGT < 1:1401689/71‑1 CAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTA < 1:4955592/71‑1 CAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGC < 1:471576/64‑1 GGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACG < 1:5161005/71‑1 GGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACG < 1:537272/71‑1 GGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGT < 1:1697289/71‑1 GGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATA < 1:3690613/57‑1 GTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACG < 1:1013278/49‑1 TAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAA < 1:3113855/53‑1 TAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAA < 1:2317448/53‑1 AGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAA > 1:3751062/1‑51 ATTGTGCGTATGGATAGGGTAGCAAATTAAAAGGTGAGACAAAAGATGAACTTACCCTGTTGCCGTAACAACAGGGTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1737047‑1736969‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacagggtaaGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGT > AP009048/1736997‑1737062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |