New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	2273890 =	47 (0.800)	4 (0.070)	3/94	NT	7.5%	intergenic (+11/‑170)	spr/rtn	predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein
	?	AP009048	2273912 =	55 (1.020)					intergenic (+33/‑148)	spr/rtn	predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein

AAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2273952‑2273890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT  >  AP009048/2273912‑2273981                                                                                                                                       AAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATC                                                                         >  1:4476930/1‑62                 AGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCC                                                                        >  1:4560021/1‑47                                   CTCGTCAGGATAGCCAAGGGATTGCATCCAAACGAGTTAACTGAAAGCACTGCTTAGGCA                                         <  1:1944747/60‑1                                   CTCGTCAGGATAGCCAAGGGATTGCATCCAAACGAGTTAACTGAAAGCACTGCTTAGGCA                                         <  1:383264/60‑1                                          GGATAGCCAAGGGATTGCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCT                                    <  1:4816680/58‑1                                           GATAGCCAAGGGATTGCATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTT                                 <  1:3908029/60‑1                                                             TCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGT    >  1:1738841/1‑71                                                             TCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGT    >  1:627018/1‑71                                                             TCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTT                            <  1:2763203/47‑1                                                              CCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTT   >  1:3580068/1‑71                                                               CTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT  >  1:2504388/1‑71                                                               CTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT  <  1:3759647/71‑1                                                               CTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATG     >  1:3708898/1‑68                                                                                                                                       AAAAAAGCACTGCCTAAGCAGTGCTTTCAGTTAACTCGTCAGGATAGCCAAGGGATTGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/2273952‑2273890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT  >  AP009048/2273912‑2273981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.