| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2461138 = | 56 (0.960) | 4 (0.080) | 3/90 | NT | 8.3% | intergenic (‑46/+635) | yfcV/sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | AP009048 | 2461164 = | 39 (0.750) | intergenic (‑72/+609) | yfcV/sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase | |||||
TACGACCTGTTTTTTTGGATCGCATGCCGTATTCAATGGCTGGGTATAAACATTGGCTATTGACTGAATCAATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2461212‑2461138‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatgtTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTG > AP009048/2461164‑2461233 TACGACCTGTTTTTTTGGATCGCATGCCGTATTCAATGGCTGGGTATAAACATTGGCTATTGACTGAATC < 1:5066496/70‑1 ACGACCTGTTTTTTTGGATCGCATGCCGTATTCAATGGCTGGGTATAAACATTGGCTATTGACTGAATCA < 1:1265401/70‑1 cACCTGTTTTTTTGGATCGCATGCCGTATTCAATGGCTGGGTATAAACATT‑GCTATTGACTGAATCAATG > 1:4659787/2‑70 TCGCATGCCGTATTCAATGGCTGGGTATAAACATTGGCTATTGACTGAATCAATG < 1:774886/55‑1 TCAATGGCTGGGTATAAACATTGGCTATTGACTGAATCAA > 1:4179972/1‑40 CATTGGCTATTGACTGAATCAATGTTTATACCCAGCCATTGAATACGGCATGCGAT < 1:3825546/56‑1 CATTGGCTATTGACTGAATCAATGTTTATACCCAGCCATTGAATACGG < 1:2559614/48‑1 TTGGCTATTGACTGAATCAATGTTTATACCCAGCCATTGAATACGGCA > 1:2283227/1‑48 TTGGCTATTGACTGAATCAATGTTTATACCCAGCCATTGAATACGGCA > 1:4110416/1‑48 AATGTTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGG > 1:2688754/1‑71 ATGTTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAAC < 1:5048653/45‑1 GTTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAA > 1:3257/1‑42 TTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTG < 1:4874617/71‑1 TTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAA < 1:50976/55‑1 TACGACCTGTTTTTTTGGATCGCATGCCGTATTCAATGGCTGGGTATAAACATTGGCTATTGACTGAATCAATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2461212‑2461138‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatgtTTATACCCAGCCATTGAATACGGCATGCGATCCAAAAAAACAGGTCGTAAAAAATGTATTCGTTGGTGTG > AP009048/2461164‑2461233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |