| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2560691 | 46 (0.790) | 4 (0.070) | 3/96 | NT | 7.8% | coding (484/501 nt) | yffI | predicted carboxysome structural protein with predicted role in ethanolamine utilization |
| ? | AP009048 | = 2560710 | 51 (0.930) | coding (465/501 nt) | yffI | predicted carboxysome structural protein with predicted role in ethanolamine utilization | |||||
TCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2560619‑2560691‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGGAGGTGCCGGGTGTCCTACAACACCC < AP009048/2560710‑2560641 TCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGA > 1:4173842/1‑71TCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGA > 1:688839/1‑71 TGCCGGGTGTTGTAGGACACCCGGCACCTCCGCCAGGTTAATGGGGCTTGAGAC > 1:3812060/1‑54 CGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGTAAACGCAGT < 1:4449974/62‑1 TTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACG < 1:4722251/46‑1 GGCACCTCCGACAGGTTAATGGGGCTTGAGACGTAAACGCAGTAGTCGTTATCGT > 1:2026886/1‑55 GGCACCTCCGACAGGTTAATGGGGCTTGAGACGTAAACGCAGTAGTCGTTATCGT > 1:4486604/1‑55 CCGACAGGTTAATGGGGCTTGAGACGTAAACGCAGTAGTCGTTATCGTC > 1:1319357/1‑49 ACGTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGGAGGTGCCGGGTGTCCTACAACAC > 1:4798835/1‑71 ACGTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGGAGGTGCCGGGTGTCCTACAACAC > 1:874159/1‑71 ACGTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCG > 1:1209023/1‑47 CGTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGGAGGTGCCGGGTGTCCTACAACACC < 1:2886588/71‑1 GTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGGAGGTGCCGGGTGTCCTACAACACCC < 1:4849006/71‑1 GTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGG < 1:4207184/46‑1 TCTTTTTCATGATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2560619‑2560691‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgTAAACGCAGTAGTCGTTATCGTCTCAAGCCCCATTAACCTGTCGGAGGTGCCGGGTGTCCTACAACACCC < AP009048/2560710‑2560641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |