| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2901661 | 71 (1.210) | 4 (0.080) | 3/92 | NT | 5.6% | coding (1110/1479 nt) | ygcE | predicted kinase |
| ? | AP009048 | = 2901673 | 72 (1.360) | coding (1122/1479 nt) | ygcE | predicted kinase | |||||
ATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2901588‑2901661‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGC < AP009048/2901673‑2901606 ATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAAT > 1:3544381/1‑71 TCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATC < 1:90837/71‑1 TCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATC < 1:5249364/71‑1 TCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAAT < 1:1605999/70‑1 CGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCA > 1:1563510/1‑71 CGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCA > 1:2323449/1‑71 CGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCA > 1:2711102/1‑71 AGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGGATCACATGCTTCGCAAAGT > 1:2580913/1‑71 GGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATC > 1:2712960/1‑50 CGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCACATGCTTCGCAAAGTGAT > 1:890762/1‑67 CAATATGTGTAATGAAATGAATCACATGCTTCGCAAAGTGA > 1:2811377/1‑41 CAATATGTGTAATGAAATGAATCACATGCTTCGCAAAGTG > 1:1270531/1‑40 ATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTTTCGTAATTGTTCTTCAGCGTCAGCGCCAC > 1:838636/1‑71 ATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGT < 1:710117/46‑1 ATCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGT < 1:140169/46‑1 ATCACATGCTTCGCAAAGTGATTCATTTCATTACACATA < 1:3242798/39‑1 TCACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACG > 1:3681636/1‑71 CACATGCTTCGCATAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGC > 1:4965825/1‑71 CACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATT > 1:2367109/1‑48 ACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTT > 1:4611887/1‑53 ACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGT > 1:3276108/1‑40 CATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTT > 1:2444103/1‑52 CATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTT > 1:1740377/1‑52 ATCGTTCGATACTGGAAAGCGTGGCGCTGACGCTGAAGAACAATTACGACAATATGTGTAATGAAATGAATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2901588‑2901661‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGC < AP009048/2901673‑2901606 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |