| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2926963 | 52 (0.890) | 4 (0.070) | 3/96 | NT | 7.9% | coding (79/1290 nt) | sdaC | predicted serine transporter |
| ? | AP009048 | = 2926980 | 44 (0.800) | coding (96/1290 nt) | sdaC | predicted serine transporter | |||||
TCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2926896‑2926963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCGTGCCGTAAAGGCCCAGCATCCACATGGTGTCTGTCTTGCGCCAGGCACTACGAGAGTCTTTCGACGC < AP009048/2926980‑2926912 TCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGC > 1:2873510/1‑68TCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATG > 1:5255156/1‑67 GCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGAT > 1:4310471/1‑50 CGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCCGTGCCGTAAAGGCCCAGC < 1:3108844/70‑1 TCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCCGTGCCGTAAAGGCCCAGCA > 1:4285665/1‑69 TCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCCGTGCCGTAAAGGCCCAGCA > 1:4457032/1‑69 TCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGAT < 1:464462/47‑1 GCAAGACAGACACCATGTGGATGCCGTGCCGTAAAGGCCC < 1:2153753/40‑1 TGCCGTGCCGTAAAGGCCCAGCATCCACATTGTGTCTGTCTTGCGCCAGGCACTACGAGAGTCTTTCGACG > 1:2322139/1‑71 TGCCGTGCCGTAAAGGCCCAGCATCCACATGGTGTCTGTCTTGCGCCAGGCACTACGAGAGTCTTTCGACG > 1:2141431/1‑71 CCGTGCCGTAAAGGCCCAGCATCCACATGGTGTCTGTCTTGCGCCAGGCACTACGAGAGTCTTTCGACGC < 1:3388371/70‑1 TCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2926896‑2926963‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcCGTGCCGTAAAGGCCCAGCATCCACATGGTGTCTGTCTTGCGCCAGGCACTACGAGAGTCTTTCGACGC < AP009048/2926980‑2926912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |