| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2955835 | 55 (0.940) | 5 (0.090) | 5/92 | NT | 8.7% | coding (1706/2889 nt) | ptr | protease III |
| ? | AP009048 | = 2955846 | 55 (1.040) | coding (1695/2889 nt) | ptr | protease III | |||||
AACTTATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2955761‑2955835‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaaTCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTTAAGCAACCAGGCGT < AP009048/2955846‑2955779 AACTTATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGC > 1:713424/1‑71 ACTTATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCG > 1:598278/1‑71 CTTATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGC < 1:3146549/71‑1 TATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGCA > 1:4356028/1‑70 TATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGCA > 1:3904975/1‑70 GGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGCAATCAGGTGATGTTTG > 1:300539/1‑65 TTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGCAATCAGGTGATGTTTGCG < 1:3144001/61‑1 GCGCCAGCCCTGCGAGATAATCATTGAGCGCAATCAGGTGATGTT > 1:1479053/1‑45 CCTGCGAGATAATCATTGAGCGCAATCAGGTGATGTTT < 1:4024715/38‑1 GCGAGATAATCATTGAGCGCAATCAGGTGTTGTTTG < 1:4280302/36‑1 CGCAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAG > 1:2171594/1‑57 CGCAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGA < 1:1958223/53‑1 CGCAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCA > 1:2481976/1‑39 GCAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTTAAGCAACCAGGCG > 1:3947815/1‑71 GCAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTTAA > 1:4387047/1‑60 CAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTT < 1:3163735/57‑1 CAATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCCCTTGATCAGTT < 1:5303889/57‑1 AATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTTAAGCAACCAGCCGT > 1:3190912/1‑70 ATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGG > 1:50710/1‑42 ATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAG > 1:3000581/1‑36 ATCAGGTGATGTTTGCGCTCAATGATTATCTCGCAG > 1:2742857/1‑36 AACTTATGCCACCAACCGACGCCTGGTTGCTTAACTGATCAAGCGCCAGCCCTGCGAGATAATCATTGAGCGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2955761‑2955835‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaaTCAGGTGATGTTTGCGCTCAATGATTATCTCGCAGGGCTGGCGCTTGATCAGTTAAGCAACCAGGCGT < AP009048/2955846‑2955779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |