| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3182534 = | 74 (1.260) | 4 (0.080) | 3/92 | NT | 6.3% | coding (589/654 nt) | ribB | 3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase |
| ? | AP009048 | 3182560 = | 52 (0.980) | coding (563/654 nt) | ribB | 3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase | |||||
TGTGAGCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3182606‑3182534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caataCACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCGGTTTA > AP009048/3182560‑3182625 TGTGAGCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAA < 1:1111018/71‑1 GTGAGCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAA > 1:5192861/1‑70 GTGAGCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAA > 1:346979/1‑70 GTGAGCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAA > 1:290938/1‑70 GCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACAC < 1:2994105/64‑1 TGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACA < 1:2473314/63‑1 CTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAA < 1:24400/61‑1 TGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAAT < 1:1617727/58‑1 GTGCACCAGAGTGTATTGAGTTTGCCAATAAACACA < 1:1316188/36‑1 CACCAGAGTGTATTGAGTTTGCCAATAAACACAATACACTCTGGTGCACGCGCCATCGTGCCATCGTCAT > 1:4087571/1‑70 GAGTTTGCCAATAAACACAATACACTCTGGTGCACGCGCC > 1:1748884/1‑40 TTTGCCAATAAACACAATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACA < 1:2068599/68‑1 TTTGCCAATAAACACAATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACA < 1:4811436/68‑1 CAATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCGGTTT > 1:2060606/1‑70 AATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCGGTTTA > 1:471835/1‑70 AATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCGGTTTA < 1:4773799/70‑1 AATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCGGTTTA > 1:4999419/1‑70 AATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCG > 1:2439486/1‑65 AATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACAC > 1:3579163/1‑52 ATACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTA < 1:1682847/55‑1 TACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTA < 1:4794853/54‑1 TACACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAG < 1:4919745/52‑1 TGTGAGCTGACTAATGACGATGGCACGATGGCGCGTGCACCAGAGTGTATTGAGTTTGCCAATAAACACAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3182606‑3182534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caataCACTCTGGTGCACGCGCCATCGTGCCATCGTCATTAGTCAGCTCACACAGTACACCAGCCGGTTTA > AP009048/3182560‑3182625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |