New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 3511876	58 (0.990)	3 (0.060)	3/90	NT	5.0%	coding (2006/2199 nt)	priA	primosome factor n'
	?	AP009048	= 3511884	62 (1.200)					coding (2014/2199 nt)	priA	primosome factor n'

ATAACAATCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/3511801‑3511876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagaaCCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCG  <  AP009048/3511884‑3511816                                                                                                                                                   ATAACAATCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGAC                                                                            <  1:1563977/71‑1    ACAATCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGAC                                                                            >  1:4613261/1‑68                   CATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAACCCACAGTTTCTC                                                          <  1:4185970/71‑1                     TTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAACCCACAGTTTCTCGT                                                        <  1:1188436/71‑1                       GTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAA                                                                       <  1:4817203/54‑1                                ACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAA                                                                       <  1:3134946/45‑1                                                   CTCTCCAGCCCACTGGCAGACGAGAACCCACAGTTTC                                                            <  1:230310/37‑1                                                                       CGAGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAG             <  1:3202587/64‑1                                                                         AGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGG    >  1:4503844/1‑71                                                                         AGAACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGCTGTTGCAGGAACAATGG    >  1:2215136/1‑71                                                                           AACCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCG  <  1:1957379/71‑1                                                                                                                                                   ATAACAATCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/3511801‑3511876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagaaCCCACAGTTTCTCGTCTGCCAGTGGGCTGGAGAGGATCAGATTACGCAGTTGTTGCAGGAACAATGGCG  <  AP009048/3511884‑3511816

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.