| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3835939 | 45 (0.770) | 3 (0.060) | 3/88 | NT | 6.3% | coding (641/936 nt) | rfaS | lipopolysaccharide core biosynthesis protein |
| ? | AP009048 | = 3835953 | 50 (0.990) | coding (655/936 nt) | rfaS | lipopolysaccharide core biosynthesis protein | |||||
GTTGTCAAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3835863‑3835939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattagCATTTAATGTTCTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGT < AP009048/3835953‑3835890 GTTGTCAAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAA > 1:4973740/1‑71 TTGTCAAAGATAAGACATCATCTACGACTTCAAAGTATTTTATTGAAAAACAAATATCTTATGAAGAGAA > 1:893933/1‑70 TTGTCAAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAA < 1:843616/70‑1 TCAAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATAT > 1:3588832/1‑70 TCAAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATA < 1:2607739/69‑1 AAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTA < 1:4855622/70‑1 AAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATAT > 1:5183086/1‑68 AGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAG > 1:1917269/1‑69 AGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAG > 1:3051608/1‑69 GACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGCATTTAATGTTCTTCTAATA < 1:5342493/71‑1 CAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGCATTTAATGTTCTTCTAATATTCTC > 1:1979258/1‑71 CAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAGCATTTAATGTTCTTCTAATATTC < 1:4500597/69‑1 AAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAAT < 1:3075504/39‑1 GATTGAAAAACAAATATCTTATGAAGAGAATATTA > 1:4813855/1‑35 ATATTAGCATTTAATGTTCTTCTAATGTTCTCTTCATAAGATATTTGTTTTTCAA > 1:5089312/1‑55 ATATTAGCATTTAATGTTCTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAG < 1:2379961/70‑1 TATTAGCATTTAATGTTCTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGT < 1:5114173/70‑1 ATTAGCATTTAATGTTCTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGA < 1:1905481/66‑1 GCATTTAATGTTCTTCTAATATTCTCTTCATAAGATATTTGTTTT < 1:5327151/45‑1 GTTGTCAAAGATAAGACATCATCTACGACTTCAAAGTATTTGATTGAAAAACAAATATCTTATGAAGAGAATATTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3835863‑3835939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattagCATTTAATGTTCTTCTAATATTCTCTTCATAAGATATTTGTTTTTCAATCAAATACTTTGAAGT < AP009048/3835953‑3835890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |