| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3975752 = | 91 (1.550) | 3 (0.060) | 3/90 | NT | 3.7% | intergenic (+323/‑45) | gadX/gadW | DNA‑binding transcriptional dual regulator/DNA‑binding transcriptional activator |
| ? | AP009048 | 3975779 = | 75 (1.450) | intergenic (+350/‑18) | gadX/gadW | DNA‑binding transcriptional dual regulator/DNA‑binding transcriptional activator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3975827‑3975752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtatGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTATC > AP009048/3975779‑3975848 GAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTC < 1:1817178/71‑1GAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTT‑AATTTCA < 1:4477356/71‑1 TGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCA > 1:2664312/1‑69 GGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTAT > 1:4104449/1‑70 GGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTC < 1:1067608/65‑1 GGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTC < 1:1711631/65‑1 GATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGT > 1:2398274/1‑43 ATACTGCGATTATTTCAATTTCAGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGA < 1:161530/67‑1 ACTGCGATTATTTCAATTTCAGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATC > 1:1626734/1‑67 GATTATTTCAATTTCAGTATGAAATATAAGGGATAATC < 1:85964/38‑1 CAGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATAT > 1:3653025/1‑71 CAGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATAT < 1:3947361/71‑1 CAGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGAT < 1:1682348/47‑1 CAGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGT < 1:3403962/44‑1 AGTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATT > 1:4176909/1‑71 GTATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATT > 1:4715930/1‑70 TATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTA < 1:2494039/71‑1 ATGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCA > 1:3095148/1‑48 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTATC < 1:1050079/71‑1 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTAT < 1:1740544/70‑1 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTAT > 1:4171725/1‑70 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTAT > 1:4114918/1‑70 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTC < 1:898462/61‑1 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCAT < 1:4363087/59‑1 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCAT < 1:3530092/59‑1 TGAAATATAAGGGATAATCATGACTCATGTCTGCTCGG > 1:3576871/1‑38 GAATGAGGATCACCGAGCAGACATGAGTCATGATTATCCCTTATATTTCATACTGCGATTATTTCAATTTCAGTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3975827‑3975752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtatGAAATATAAGGGATAATCATGACTCATGTCTGCTCGGTGATCCTCATTCGTCGTTCATTCGATATTTATC > AP009048/3975779‑3975848 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |