| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4131932 | 57 (0.970) | 3 (0.060) | 3/88 | NT | 5.3% | coding (107/879 nt) | php | predicted hydrolase |
| ? | AP009048 | = 4131942 | 58 (1.150) | coding (117/879 nt) | php | predicted hydrolase | |||||
CCATGAGCATCTGCATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4131858‑4131932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcatCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA < AP009048/4131942‑4131875 CCATGAGCATCTGCATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGT < 1:2186008/71‑1 ATGAGCATCTGCATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTT > 1:3255840/1‑70 AGCATCTGCATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT < 1:1525202/70‑1 AGCATCTGCATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT < 1:1998140/70‑1 CATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT > 1:453918/1‑62 TCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTC < 1:3506495/50‑1 TCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT > 1:4234592/1‑50 TCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTC < 1:3060776/48‑1 CGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT > 1:670547/1‑48 GGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTC < 1:3563753/45‑1 TTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGT < 1:1460708/39‑1 TAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCATCTCCTGGCAAA < 1:4203523/53‑1 TAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTC < 1:35062/40‑1 CGTGGACTGCCGCCTTGATCAGTATGCGTTCATCTCCTGGCAAATGAAC > 1:458831/1‑49 TGGACTGCCGCCTTGATCAGTATGCGTTCATCTCCTGGCAAATGA < 1:310320/45‑1 CGTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAG < 1:2924173/70‑1 GTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAT < 1:2817623/71‑1 GTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAT < 1:1042893/71‑1 GTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGA > 1:5369978/1‑66 GTTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGA > 1:4979527/1‑66 GTTCATCTCCTGGCAAATGAACGCATACTGATCAA > 1:1627268/1‑35 TTCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGAT > 1:4818350/1‑70 TCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGA > 1:2912030/1‑64 TCATCTCCTGGCAAATGAACGCATACTGATCAAGGCGG < 1:3020440/38‑1 CATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAG > 1:1315841/1‑64 ATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA > 1:5187345/1‑70 ATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA > 1:10295/1‑70 ATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA > 1:4181332/1‑70 ATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA < 1:1949870/70‑1 ATCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA < 1:2403453/70‑1 TCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTT > 1:2072030/1‑50 CCATGAGCATCTGCATATTGATCTCTCCGGCTTTAAAAACAACGTGGACTGCCGCCTTGATCAGTATGCGTTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4131858‑4131932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcatCTCCTGGCAAATGAACGCATACTGATCAAGGCGGCAGTCCACGTTGTTTTTAAAGCCGGAGAGATCAA < AP009048/4131942‑4131875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |