| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4176601 = | 71 (1.210) | 3 (0.060) | 3/90 | NT | 4.5% | coding (892/984 nt) | gspK | general secretory pathway component, cryptic |
| ? | AP009048 | 4176625 = | 64 (1.240) | coding (868/984 nt) | gspK | general secretory pathway component, cryptic | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCACTGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4176676‑4176601‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCAACCAGTGGCTTCACACCGGAGAAATC > AP009048/4176625‑4176694 CCACTGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTAT < 1:898924/71‑1CCACTGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTAT < 1:236756/71‑1 ACTGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATC > 1:3356633/1‑70 TGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCAGC > 1:3088997/1‑71 TGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCAGC > 1:4499384/1‑71 GTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCAGC < 1:2684831/69‑1 GTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTAT > 1:3638252/1‑65 CAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCA > 1:4927863/1‑61 TGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTAT < 1:428285/55‑1 TTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCAG > 1:4050676/1‑43 ATAGCCGCTATTTTACGCTGAGTACGGAAAGTATC > 1:1791861/1‑35 GCTGAGTACGGAAAGTATCAGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCT < 1:5061744/62‑1 GCTGAGTACGGAAAGTATCAGCGTAAAATAGCGGCTATAGGGAAAGAGAT < 1:4458178/50‑1 TGAGTACGGAAAGTATCAGCGTAAAATAGCGGCTATAGGGA < 1:3068501/41‑1 TCAGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCA < 1:3744828/50‑1 TCAGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCAC < 1:5022219/43‑1 TCAGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTC < 1:2823352/41‑1 CAGCGTAAAATAGCGGCTATTGGGAAAGAGATGCCTTTTCACCTGAGCAACCAG < 1:4995638/54‑1 AGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCAACCAGTGGCTTCACACCGGAGAA < 1:4043947/71‑1 AGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCAACCAGTG > 1:2425729/1‑55 AGCGTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCAA > 1:146776/1‑49 GTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCAACCAGTGGCTTCACACCGGAGAAATC < 1:1597629/71‑1 CCACTGGTTGCTCAGGTGAAAAGGCATCTCTTTCCCTATAGCCGCTATTTTACGCTGAGTACGGAAAGTATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4176676‑4176601‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgTAAAATAGCGGCTATAGGGAAAGAGATGCCTTTTCACCTGAGCAACCAGTGGCTTCACACCGGAGAAATC > AP009048/4176625‑4176694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |