| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4278235 = | 48 (0.820) | 4 (0.080) | 4/90 | NT | 8.1% | coding (521/537 nt) | ssb | Single‑stranded DNA‑binding protein |
| ? | AP009048 | 4278260 = | 49 (0.950) | intergenic (+9/+90) | ssb/yjcB | Single‑stranded DNA‑binding protein/predicted inner membrane protein | |||||
GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4278307‑4278235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcatTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTCC > AP009048/4278260‑4278329 GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGT > 1:2017748/1‑70GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATG < 1:1187247/69‑1 AGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT > 1:3904438/1‑71 ACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATG > 1:1897239/1‑42 CAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT > 1:2084992/1‑45 CAATATAACCTATTGTTTTAATGACAAATCAGAACGGAAT > 1:62926/1‑40 TAATGACAAATCAGAACGGAATGTCATTAAAACAATAGGTTATATTGT < 1:4696194/48‑1 AATGACAAATCAGAACGGAATGTCATCAAAACAATAGGTTATATT < 1:1989145/45‑1 GACAAATCAGAACGGAATGTCATTAAAACAATAGGTTATATTG < 1:3521661/43‑1 AGAACGGAATGTCATTAAAACAATAGGTTATATTGTT > 1:3534270/1‑37 TGTCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGC < 1:1345884/48‑1 TCATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCC > 1:908699/1‑71 CATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCT > 1:993941/1‑71 ATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTC > 1:3329402/1‑71 ATTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTC > 1:940363/1‑71 TTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTCC < 1:3258582/71‑1 TTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCT < 1:220198/69‑1 GCAGATGCTTTAATCATCCACCTTAAAACAATATAACCTATTGTTTTAATGACAAATCAGAACGGAATGTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4278307‑4278235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcatTAAAACAATAGGTTATATTGTTTTAAGGTGGATGATTAAAGCATCTGCCAGCCATAAAAAAGAAGCCTCC > AP009048/4278260‑4278329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |