| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4380976 = | 55 (0.940) | 3 (0.060) | 3/94 | NT | 5.1% | intergenic (+31/‑21) | efp/ecnA | Elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| ? | AP009048 | 4381000 = | 61 (1.130) | coding (4/126 nt) | ecnA | entericidin A membrane lipoprotein, antidote entericidin B | |||||
CCCGTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4381049‑4380976‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCG > AP009048/4381000‑4381066 CCCGTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTG < 1:1343163/71‑1 CCGTGAGCAGCGTGCTGGAAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGA < 1:4138459/71‑1 CGTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGAT < 1:2541619/71‑1 GTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG < 1:4337973/71‑1 GTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG > 1:4665027/1‑71 GTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG > 1:1955541/1‑71 GTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG < 1:4783759/71‑1 GTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG < 1:1004771/71‑1 GTGAGCAGAGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG > 1:2490780/1‑71 CAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG < 1:4228247/66‑1 TGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGA < 1:4131134/59‑1 AACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGA > 1:3948583/1‑46 ACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGA > 1:2744230/1‑45 ATCTCTGACCTGAATAAGTGATGATGAAACGCCTTATC < 1:354112/38‑1 CTCTGACCTGAATAAGTGATGATGAAACGCCTTATCGTTCTTG < 1:3180346/43‑1 ACCTGAATAAGTGATGGTGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGT < 1:1279304/70‑1 GATGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTC < 1:1071291/68‑1 ATGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCG > 1:1337460/1‑70 TGATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGG < 1:2490061/51‑1 GATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCG > 1:5045844/1‑66 CCCGTGAGCAGCGTGCTGGCAAGCAAAACAAGAACGATAAGGCGTTTCATCATCTCTGACCTGAATAAGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4381049‑4380976‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgATGAAACGCCTTATCGTTCTTGTTTTGCTTGCCAGCACGCTGCTCACGGGCTGTAACACCGCTCGCG > AP009048/4381000‑4381066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |