| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4420757 | 64 (1.090) | 5 (0.100) | 3/88 | NT | 7.1% | coding (216/276 nt) | yjfN | hypothetical protein |
| ? | AP009048 | = 4420766 | 76 (1.500) | coding (207/276 nt) | yjfN | hypothetical protein | |||||
CTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4420684‑4420757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtaCCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATG < AP009048/4420766‑4420698 CTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATG < 1:125514/71‑1 TGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGG > 1:995096/1‑71 TAGATGCCACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGT > 1:1590842/1‑70 TAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGT < 1:4537143/70‑1 TAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGT < 1:1987473/70‑1 TAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGT > 1:4253608/1‑70 GATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATG > 1:2134104/1‑66 GCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACA > 1:4197109/1‑52 ATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTACCGCATTATTACCATG < 1:3892892/71‑1 TCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTACCGCATTATTACCATG > 1:291695/1‑63 TCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATG > 1:4195284/1‑44 CGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTACCGCATTATTACCATG < 1:565747/52‑1 CGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTACCGCATTATTACCATG < 1:50076/52‑1 TTATCAGGCTGCTGGTCTTCGTACATGGTACCGCATTATTACC < 1:425460/43‑1 CATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTAT > 1:4762752/1‑71 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATG > 1:233769/1‑71 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATG > 1:2056192/1‑71 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTAT < 1:4900465/70‑1 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTAT > 1:857094/1‑70 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACT > 1:3046698/1‑66 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATA > 1:3204898/1‑64 ATGGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAA > 1:1609442/1‑45 GGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCA > 1:2791551/1‑71 GGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGA < 1:2513003/60‑1 GGTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGAGTACAGGCGATA < 1:3965672/62‑1 GTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCAT < 1:1739578/71‑1 GTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCAT < 1:3753836/71‑1 GTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCAT < 1:2051786/71‑1 GTACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGC > 1:3382547/1‑69 TACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATG < 1:1594551/71‑1 TACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATG < 1:3476543/71‑1 TACCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATG < 1:2265070/71‑1 CTGTAGATGACACTCATGCATACAGTATCGCCTGTACGCGCCAGTTATCAGGCTGCTGGTCTTCGTACATGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4420684‑4420757‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtaCCGCATTATTACCATGTACGAAGACCAGCAGCCTGATAACTGGCGCGTACAGGCGATACTGTATGCATG < AP009048/4420766‑4420698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |