| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4568033 = | 54 (0.920) | 3 (0.060) | 3/88 | NT | 6.4% | coding (359/969 nt) | yjiK | conserved hypothetical protein |
| ? | AP009048 | 4568058 = | 41 (0.810) | coding (334/969 nt) | yjiK | conserved hypothetical protein | |||||
ATATCTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4568108‑4568033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgttgaTAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATATTATTCGTTATGCCTGCAAT > AP009048/4568058‑4568127 ATATCTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATT < 1:3438894/71‑1ATATCTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATT < 1:3434107/71‑1ATATCTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCAT < 1:599588/70‑1 TATCTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTG > 1:2618377/1‑71 CTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTGTT > 1:2709232/1‑70 TTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTGTTG < 1:59014/68‑1 TTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTGTTG < 1:478688/68‑1 TGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTGTT > 1:2398713/1‑62 CAACAAACCTGCCGCCATTGTTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAA > 1:2991617/1‑68 AACAAACCTGCCGCCATTGTTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAA > 1:4219653/1‑67 CAAACCTGCCGCCATTGTTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGAC > 1:3989206/1‑53 TTGTTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATAT < 1:1074956/58‑1 TTGTTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATA > 1:3175102/1‑57 TGTTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATATTA > 1:2003309/1‑59 TTGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAG < 1:2371609/49‑1 TGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATATTATTCGTTATGCCTGC > 1:1101971/1‑70 TGATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAG < 1:5355097/50‑1 GATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATATTATTCGTTATGCCTGCA < 1:5280680/70‑1 ATAGTGCTAAAAAGAGTATTGCTTTGTGGCGACCAGGTCAGCGAAGAGATATTATTCGTTATGCCTGCAAT < 1:5298915/71‑1 ATAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATATTA < 1:3120849/54‑1 ATATCTCTTCGCTGACCTGGTCGGCACAAAGCAATACTCTTTTTAGCACTATCAACAAACCTGCCGCCATTGTTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4568108‑4568033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgttgaTAGTGCTAAAAAGAGTATTGCTTTGTGCCGACCAGGTCAGCGAAGAGATATTATTCGTTATGCCTGCAAT > AP009048/4568058‑4568127 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |