| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,685,038 | C→T | 100% | pseudogene (21/582 nt) pseudogene (1084/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,685,038 | 0 | C | T | 100.0% | 333.5 / NA | 109 | pseudogene (21/582 nt) pseudogene (1084/1645 nt) | ilvG ilvG | ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (58/51); total (58/51) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 109 total aligned reads displayed.
CGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATG > AP009048/3684975‑3685103 | cgcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgt < 1:1889564/70‑1 (MQ=255)cgcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAg < 1:2738153/69‑1 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg > 1:4245029/1‑71 (MQ=255) gcAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAg > 1:2460756/1‑68 (MQ=255) cAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttgt < 1:154600/71‑1 (MQ=255) gCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGttt < 1:1013908/71‑1 (MQ=255) cccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGtttt < 1:3115682/71‑1 (MQ=255) ccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:2352833/71‑1 (MQ=255) ccACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa < 1:3072017/71‑1 (MQ=255) cacaTCTGGTGCTGCCCCACATGTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:1396070/1‑71 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:5309893/65‑1 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:476724/1‑71 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:2168169/1‑71 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:2870025/1‑71 (MQ=255) cacaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTa > 1:2148169/1‑70 (MQ=255) acaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgtt > 1:1074976/1‑63 (MQ=255) acaTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaac < 1:2151114/71‑1 (MQ=255) caTCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaaca < 1:4772658/71‑1 (MQ=255) tCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaa > 1:1396156/1‑70 (MQ=255) cTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:3268338/60‑1 (MQ=255) cTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac > 1:4795144/1‑70 (MQ=255) ggTGCTGCCACACATCTCTGGTCACGACGCAATACGCAGGTTTACGATCTGACAGTTGTTTTaacaa > 1:2196862/1‑67 (MQ=38) cgTGCTGCCCCACATCTGTGGTCACGCCGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac > 1:887236/2‑71 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaaca < 1:4095306/68‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac < 1:3754583/67‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACg < 1:4169181/71‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACg < 1:986115/71‑1 (MQ=255) gTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACg > 1:1934271/1‑71 (MQ=255) gctgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGgc > 1:4071160/1‑71 (MQ=255) tgcCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGgcgc > 1:5360397/1‑71 (MQ=255) gcCCCACATCTGTGGTCACGACGCAATCTGCAGGTTTACGATCTGACAgttgtt < 1:3411967/54‑1 (MQ=39) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgtt > 1:1747217/1‑50 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:3836477/1‑70 (MQ=255) ccccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:1669480/1‑70 (MQ=255) cccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:4537226/1‑69 (MQ=255) cccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGcgcg > 1:1817824/1‑69 (MQ=255) cccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa < 1:4288432/71‑1 (MQ=255) cccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTa < 1:520808/71‑1 (MQ=255) ccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgttg < 1:4871085/49‑1 (MQ=255) ccACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaa < 1:480412/61‑1 (MQ=255) cacaTCTTTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGtttt < 1:5083808/52‑1 (MQ=39) cacaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa < 1:3518062/71‑1 (MQ=255) acaTTTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:1013093/1‑70 (MQ=255) acaTCTGTGGTTACGACGCAATCCGCAGGTTTACTATCTGACAGTTGTTTTaa > 1:3129998/1‑53 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGAGAGTTGtttt > 1:3704811/1‑51 (MQ=38) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAgt > 1:1701814/1‑45 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac > 1:2591500/1‑60 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaac < 1:5210023/57‑1 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaa > 1:2223381/1‑53 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGgcgc > 1:2201255/1‑65 (MQ=255) acaTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGAt < 1:466723/71‑1 (MQ=255) caTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaa > 1:4311334/1‑58 (MQ=255) caTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATa < 1:2876552/71‑1 (MQ=255) caTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATa < 1:2680274/71‑1 (MQ=255) aTCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAg > 1:487995/1‑71 (MQ=255) tCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGGTAGc > 1:366909/1‑71 (MQ=255) tCTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGc > 1:310519/1‑71 (MQ=255) tCTGTGGTCACGACGCAATACGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAg > 1:4568770/1‑70 (MQ=255) cTGTGGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCg > 1:2696011/1‑71 (MQ=255) gtgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTaacaacaa < 1:511386/53‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTATGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGc < 1:781347/67‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGc < 1:3073229/67‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCa < 1:4095509/71‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCa < 1:2776129/71‑1 (MQ=255) tgGTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCa > 1:2944050/1‑71 (MQ=255) ggTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGTCGCGTAGATAGCGt > 1:2364798/1‑68 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:5195863/1‑61 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAc < 1:1460946/70‑1 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAc < 1:898330/70‑1 (MQ=255) gTCACGACGCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCAc < 1:2267809/70‑1 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:4691040/1‑70 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:4729428/1‑70 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:788683/1‑70 (MQ=255) acgacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCgg > 1:4948025/1‑70 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa < 1:241792/56‑1 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGAt < 1:1473334/71‑1 (MQ=255) gacgCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGAt > 1:1213995/1‑71 (MQ=255) gCAATCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGt > 1:4841499/1‑71 (MQ=255) aaTCCGCAGGTTTACGATCTGACAGTTGTTTTaaca < 1:3927529/36‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:616867/71‑1 (MQ=255) aTCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:2346085/71‑1 (MQ=255) tCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTc < 1:1887514/56‑1 (MQ=255) tCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt > 1:762248/1‑70 (MQ=255) tCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt > 1:768545/1‑70 (MQ=255) tCCGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt > 1:5346524/1‑70 (MQ=255) ccGCAGGTTTACGATCTGACAGTTGTTTTaacaacaac > 1:3937783/1‑38 (MQ=255) ccGCAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTa > 1:3961140/1‑70 (MQ=255) ccGCAGGTTTACGATCTGACAGTTCTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTaa > 1:5201953/1‑71 (MQ=255) cAGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGc < 1:4246432/71‑1 (MQ=255) cAGGTTTACGATCTGACAGTTGTTTTAAAAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGc > 1:5093283/1‑71 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa < 1:2403607/44‑1 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCg < 1:2406928/55‑1 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGt < 1:4092679/65‑1 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGcc < 1:637399/71‑1 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGc > 1:589771/1‑70 (MQ=255) aGGTTTACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGc > 1:1462365/1‑70 (MQ=255) ttACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGa > 1:5336603/1‑40 (MQ=255) tACGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAggca > 1:3087833/1‑69 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:987894/70‑1 (MQ=255) cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATg > 1:3986742/1‑71 (MQ=255) | CGCAGCCCACATCTGGTGCTGCCCCACATCTGTGGTCACGACGCAATCCGCAGGTTTACGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATG > AP009048/3684975‑3685103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |