mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 32.4% | 50.7 / 56.2 | 72 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 127 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 2662574 | NA (NA) | 7 (0.210) +49 bp |
4/188 | 5.2 | NA | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_KO_pgi | = 2662483 | 39 (0.770) | 7 (0.210) +49 bp |
4/188 | 5.2 | 21.5% | noncoding (175/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_KO_pgi | = 2662392 | 60 (1.180) | 7 (0.210) +49 bp |
4/188 | 5.2 | 15.1% | noncoding (84/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_KO_pgi | = 274419 | NA (NA) | 7 (0.140) | 7/276 | 5.8 | NA | coding (699/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_KO_pgi | = 274423 | NA (NA) | coding (695/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913_3_KO_pgi | 496998 = | NA (NA) | 7 (0.150) | 6/260 | 5.9 | NA | intergenic (+4/‑177) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| ? | NC_000913_3_KO_pgi | 497030 = | NA (NA) | intergenic (+36/‑145) | htpG/adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase | |||||
| * | ? | NC_000913_3_KO_pgi | 1086010 = | 68 (1.340) | 6 (0.130) | 6/268 | 6.1 | 8.2% | coding (1019/1065 nt) | phoH | ATP‑binding protein; putative PhoH family P‑loop ATPase |
| ? | NC_000913_3_KO_pgi | 1086040 = | 71 (1.490) | coding (1049/1065 nt) | phoH | ATP‑binding protein; putative PhoH family P‑loop ATPase | |||||
| * | ? | NC_000913_3_KO_pgi | 1552249 = | NA (NA) | 5 (0.110) | 5/262 | 6.4 | NA | noncoding (1/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_KO_pgi | 1552279 = | NA (NA) | noncoding (31/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_KO_pgi | 1552071 = | NA (NA) | 5 (0.110) | 5/262 | 6.4 | NA | noncoding (1/97 nt) | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_KO_pgi | 1552279 = | NA (NA) | noncoding (31/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_KO_pgi | 2219625 = | NA (NA) | 5 (0.100) | 5/272 | 6.7 | 6.7% | noncoding (1/34 nt) | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_KO_pgi | 3114542 = | 70 (1.450) | noncoding (165/168 nt) | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_KO_pgi | = 227039 | 44 (0.870) | 6 (0.120) | 5/274 | 6.7 | 14.1% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | = 4038805 | 31 (0.640) | noncoding (1287/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||