New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	662343 =	44 (0.830)	3 (0.060)	3/254	NT	6.5%	intergenic (‑65/+36)	lipB/ybeD	octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein
	?	NC_000913_3_pae_pgi	662368 =	45 (0.900)					intergenic (‑90/+11)	lipB/ybeD	octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein

CCAAGCAGCAAAGGCAACTACCACTCGGTATCTATCACTATCAACGCCACTCATATCGAGCAGGTTGAAACACTGTATGAAGAACTGGGCAAAATCGATATTGTCCGCATGGTTCTGTAACTCGCTTCTCCGTTACCCGGCTCCTGGTCGGGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/662498‑662343 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtaacGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCTTTGCTGCTTGGTTTTACC  >  NC_000913_3_pae_pgi/662368‑662505                                                                                                                                                                                                                                                                                                        CCAAGCAGCAAAGGCAACTACCACTCGGTATCTATCACTATCAACGCCACTCATATAGAGCAGGTTGAAACACTGTATGAAGAACTGGGTAAAATCGATATTGTCCGCCTGGTTCTGTAACTCGCTTCTACGTTACCCGGCTCCCGGTC                                                                                                                                                   >  1:677869/1‑149  CAAGCAGCAAAGGCAACTACCACTCGGTATCTATCACTATCAACGCCACTCATATCGAGCAGGTTGAAACACTGTATGAAGAACTGGGCAAAATCGATATTGTCCGCATGGTTCTGTAACTCGCTTATCCGTTCCCCGGCTCCTGCTCG                                                                                                                                                  >  1:20025/1‑149   AAGCAGCAAAGGCAACTACCACTCGGTATCTATCACTATCAACGCCACTCATATCGAGCAGGTTGAAACACTGTATGAAGAACTGGGCAAAATCGATATTGTCCGCATGGTTCTGTAACTCACTTCTCCGTTACCCGGCTCCTTGTCGt                                                                                                                                                 >  1:183878/1‑148                                                                                                                      TAACTCGCTTCTCCGTTACCCGGCTCCTGGTCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTC                                                                                          >  1:291186/1‑89                                                                                                                      TAACTCGCTTCTCCGTTACCCGGCTCCTGGTCGGGTAACGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTC                                                                                          <  2:291186/89‑1                                                                                                                                        CCCGGCTCCTGGTCGGGTAACGGAGAAACGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAATTGCCTTTGCTGCT            >  2:990492/1‑149                                                                                                                                                  tgttGGGTATCGGAGAAGCGAGTTACTGACCCATGCGGACAATATCGACTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGGGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCTTTGCTGCTTGGTTTTACC  <  1:317509/145‑1                                                                                                                                                                                                                                                                                                        CCAAGCAGCAAAGGCAACTACCACTCGGTATCTATCACTATCAACGCCACTCATATCGAGCAGGTTGAAACACTGTATGAAGAACTGGGCAAAATCGATATTGTCCGCATGGTTCTGTAACTCGCTTCTCCGTTACCCGGCTCCTGGTCGGGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/662498‑662343 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtaacGGAGAAGCGAGTTACAGAACCATGCGGACAATATCGATTTTGCCCAGTTCTTCATACAGTGTTTCAACCTGCTCGATATGAGTGGCGTTGATAGTGATAGATACCGAGTGGTAGTTGCCTTTGCTGCTTGGTTTTACC  >  NC_000913_3_pae_pgi/662368‑662505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.