| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913_3_pae_pgi | 3,440,087 | Δ2 bp | coding (942‑943/990 nt) | rpoA ← | RNA polymerase, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 3,440,086 | 0 | C | . | 100.0% | 76.0 / NA | 17 | coding (944/990 nt) | rpoA | RNA polymerase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/8); total (9/8) | |||||||||||
| * | NC_000913_3_pae_pgi | 3,440,087 | 0 | C | . | 100.0% | 76.0 / NA | 17 | coding (943/990 nt) | rpoA | RNA polymerase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (9/8); total (9/8) | |||||||||||
TAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATA > NC_000913_3_pae_pgi/3439942‑3440208 || tAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGcagaga < 3:47139/150‑6 (MQ=255) gTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGc > 1:111949/1‑150 (MQ=255) tGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCAc < 2:111949/150‑1 (MQ=255) ttGACGACCACTCCTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAAtc > 2:18327/1‑150 (MQ=255) acgacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa < 3:26228/150‑1 (MQ=255) gacCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGt > 4:74451/1‑150 (MQ=255) tctTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAgaga < 3:74451/150‑1 (MQ=255) tctcAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg < 1:18327/150‑1 (MQ=255) aGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCt > 4:19443/1‑102 (MQ=255) aGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCt < 3:19443/102‑1 (MQ=255) aGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGc > 3:115773/1‑150 (MQ=255) ccTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa > 3:36702/1‑98 (MQ=255) ccTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCa < 4:36702/98‑1 (MQ=255) ccTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg > 2:55830/1‑133 (MQ=255) ccTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAg < 1:55830/133‑1 (MQ=255) ttGCCGGTGGCCAGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATa > 1:126928/1‑150 (MQ=255) aGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGa > 2:176157/1‑127 (MQ=255) aGTTTTCCAGGCGCATG‑‑CAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGa < 1:176157/127‑1 (MQ=255) || TAGCCTGGCGATGGCTGCTGTTGCGGTTCAGTTGACGACCACTCTTACGATGGCGCATGACCTTATCCTTCTCAGTAAAACCTTAACCTGTGATCCGGTTACTCGTCAGCGATGCTTGCCGGTGGCCAGTTTTCCAGGCGCATGCCCAGAGACAGTCCACGGGAAGCCAGCACGTCTTTAATCTCAGTAAGAGATTTTTTACCAAGGTTAGGCGTTTTAAGGAGCTCAACCTCGGTACGCTGTACCAGATCACCGATATAGTGGATA > NC_000913_3_pae_pgi/3439942‑3440208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |