| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 5590 = | NA (NA) | 9 (0.590) | 8/238 | 0.8 | 42.9% | noncoding (26/105 nt) | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_pgi | 2304478 = | 12 (0.780) | noncoding (62/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
TGGCGAACTGGTGTTTAAACGCTACGAGCAGCGTTAAGTTTGCAGTCAATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/5719‑5590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCA > NC_000913_3_pae_pgi/2304478‑2304612 TGGCGAACTGGTGTTTAAACGCTACGAGCAGCGTTAAGTTTGCAGTCAATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGCGCGTCTTAT < 2:11784/150‑1 AAACGCTACGAGCAGCGTTAAGTTTGCAGTCAATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGCGCGTCTTAT > 3:72726/1‑134 AAACGCTACGAGCAGCGTTAAGTTTGCAGTCAATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGCGCGTCTTAT < 4:72726/134‑1 AACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGG < 3:30598/89‑1 AACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGG > 4:30598/1‑89 ACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGGGCGTCTTATCAG > 3:28504/1‑71 ACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAG < 4:28504/71‑1 GGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAC < 1:69332/126‑1 GGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGAC > 2:69332/1‑126 TGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCA > 1:7909/1‑136 TGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCA < 2:7909/136‑1 TGGCGAACTGGTGTTTAAACGCTACGAGCAGCGTTAAGTTTGCAGTCAATGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/5719‑5590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCA > NC_000913_3_pae_pgi/2304478‑2304612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |