mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 46 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 4171833 | 34 (1.160) | 7 (0.240) | 5/282 | 3.3 | 16.0% | noncoding (4171833/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4213192 | 40 (1.380) | noncoding (4213192/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3248814 = | 35 (1.190) | 4 (0.150) | 4/266 | 3.5 | 12.0% | noncoding (3248814/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3248839 = | 26 (0.950) | noncoding (3248839/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4628844 | NA (NA) | 4 (0.140) | 4/272 | 3.6 | NA | noncoding (120/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | = 4628874 | NA (NA) | noncoding (150/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_vch_tpiA | 4108589 = | NA (NA) | 4 (0.140) | 4/272 | 3.6 | NA | noncoding (19/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4373234 = | NA (NA) | noncoding (8/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_vch_tpiA | 4108571 = | NA (NA) | 4 (0.140) | 4/272 | 3.6 | NA | noncoding (1/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4108596 = | NA (NA) | noncoding (26/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 12.2% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4460506 = | 33 (1.180) | noncoding (62/84 nt) | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 13.2% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4373303 = | 28 (1.000) | noncoding (77/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 10.6% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 4249453 = | 43 (1.540) | noncoding (103/125 nt) | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 10.8% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | 3598473 = | 41 (1.470) | noncoding (77/99 nt) | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_vch_tpiA | 1068445 = | 26 (0.890) | 4 (0.140) | 4/272 | 3.6 | 10.2% | noncoding (92/98 nt) | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | = 3330482 | 46 (1.650) | noncoding (23/98 nt) | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||