mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 22 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,407,971 | 0 | T | G | 57.1% | ‑1.5 / 21.0 | 21 | L122R (CTT→CGT) | panF | pantothenate:Na(+) symporter |
| * | NC_000913 | 454,926 | 0 | G | A | 54.5% | ‑6.6 / 10.1 | 21 | intergenic (+137/‑207) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 454,933 | 0 | T | A | 54.5% | ‑1.5 / 16.7 | 23 | intergenic (+144/‑200) | bolA/tig | DNA‑binding transcriptional dual regulator BolA/trigger factor |
| * | NC_000913 | 2,470,427 | 0 | C | A | 52.6% | 11.5 / 23.1 | 19 | Q433K (CAA→AAA) | yfdI | CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase |
| * | NC_000913 | 2,177,221 | 0 | T | G | 50.0% | 7.5 / 15.8 | 28 | intergenic (‑17/+291) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 3,455,680 | 0 | G | T | 48.7% | 20.4 / 20.4 | 39 | V35L (GTG→TTG) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 707,981 | 0 | C | T | 47.1% | 2.0 / 16.4 | 26 | intergenic (+224/‑353) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 3,455,671 | 0 | A | T | 46.2% | 24.9 / 22.2 | 39 | I32F (ATT→TTT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 4,296,060 | 0 | C | T | 41.8% | 43.5 / 67.1 | 55 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 361,305 | 0 | T | G | 40.7% | 21.2 / 13.3 | 27 | N186H (AAC→CAC) | lacA | galactoside O‑acetyltransferase |
| * | NC_000913 | 3,455,677 | 0 | A | T | 40.0% | 34.8 / 15.9 | 40 | N34Y (AAT→TAT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 2,519,203 | 0 | T | A | 38.9% | 28.4 / 13.3 | 36 | *131K (TAA→AAA) | yfeD | putative DNA‑binding transcriptional regulator YfeD |
| * | NC_000913 | 238,523 | 0 | G | T | 37.0% | 25.6 / 12.6 | 54 | L72I (CTT→ATT) | ykfM | uncharacterized protein YkfM |
| * | NC_000913 | 1,331,179 | 0 | C | A | 35.5% | 33.1 / 11.2 | 31 | A44A (GCC→GCA) | topA | DNA topoisomerase 1 |
| * | NC_000913 | 2,265,423 | 0 | G | T | 34.2% | 47.7 / 14.0 | 41 | intergenic (‑128/‑27) | yeiW/yeiP | PF03692 putative metal‑chelating domain‑containing protein YeiW/elongation factor P family protein |
| * | NC_000913 | 1,425,558 | 0 | T | G | 33.3% | 34.3 / 15.2 | 36 | V61G (GTT→GGT) | ynaK | Rac prophage; ParB‑like nuclease domain‑containing protein YnaK |
| * | NC_000913 | 2,185,429 | 0 | T | G | 32.3% | 37.7 / 12.3 | 31 | intergenic (‑128/+95) | thiM/rcnR | hydroxyethylthiazole kinase/DNA‑binding transcriptional repressor RcnR |
| * | NC_000913 | 3,605,997 | 0 | T | G | 32.0% | 35.1 / 11.7 | 25 | F83V (TTT→GTT) | yhhN | conserved inner membrane enzyme YhhN |
| * | NC_000913 | 1,759,036 | 0 | G | C | 31.0% | 43.8 / 12.4 | 30 | V85V (GTC→GTG) | sufE | sulfur acceptor for SufS cysteine desulfurase |
| * | NC_000913 | 2,982,476 | 0 | C | A | 24.6% | 121.7 / 13.9 | 57 | intergenic (‑294/+21) | araE/kduD | arabinose:H(+) symporter/putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase |