mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 76 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4592946 = | 89 (1.030) | 4 (0.050) | 4/240 | NT | 4.6% | intergenic (‑271/‑348) | yjjP/yjjQ | pseudogene, premature stop codon, putative structural protein/putative transcriptional regulator |
| ? | CP009273 | 4592978 = | 82 (0.990) | intergenic (‑303/‑316) | yjjP/yjjQ | pseudogene, premature stop codon, putative structural protein/putative transcriptional regulator | |||||
| * | ? | CP009273 | = 4367865 | 91 (1.060) | 4 (0.050) | 3/242 | NT | 4.4% | coding (897/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| ? | CP009273 | = 4367894 | 87 (1.040) | coding (868/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak | |||||
| * | ? | CP009273 | = 4180587 | 82 (0.950) | 4 (0.050) | 4/238 | NT | 4.5% | intergenic (‑172/+76) | sroH/thiH | novel sRNA, function unknown/tyrosine lyase, involved in thiamine‑thiazole moiety synthesis |
| ? | CP009273 | = 4180609 | 91 (1.110) | intergenic (‑194/+54) | sroH/thiH | novel sRNA, function unknown/tyrosine lyase, involved in thiamine‑thiazole moiety synthesis | |||||
| * | ? | CP009273 | = 4148274 | 76 (0.880) | 3 (0.030) | 3/250 | NT | 3.5% | noncoding (49/110 nt) | oxyS | sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent |
| ? | CP009273 | = 4148323 | 90 (1.050) | intergenic (‑1/‑95) | oxyS/oxyR | sRNA antisense regulator activates genes that detoxify oxidative damage, Hfq‑dependent/oxidative and nitrosative stress transcriptional regulator | |||||
| * | ? | CP009273 | 4139682 = | 100 (1.160) | 4 (0.050) | 4/246 | NT | 4.2% | coding (512/1734 nt) | eptC | LPS heptose I phosphoethanolamine transferase |
| ? | CP009273 | 4139716 = | 86 (1.020) | coding (478/1734 nt) | eptC | LPS heptose I phosphoethanolamine transferase | |||||
| * | ? | CP009273 | 4111277 = | 93 (1.080) | 3 (0.030) | 3/250 | NT | 3.0% | coding (399/1332 nt) | hslU | molecular chaperone and ATPase component of HslUV protease |
| ? | CP009273 | 4111331 = | 98 (1.140) | coding (345/1332 nt) | hslU | molecular chaperone and ATPase component of HslUV protease | |||||
| * | ? | CP009273 | = 4081634 | 76 (0.880) | 4 (0.050) | 4/240 | NT | 4.9% | coding (1582/1749 nt) | frvR | putative frv operon regulator; contains a PTS EIIA domain |
| ? | CP009273 | = 4081658 | 81 (0.980) | coding (1558/1749 nt) | frvR | putative frv operon regulator; contains a PTS EIIA domain | |||||
| * | ? | CP009273 | = 4027363 | 96 (1.120) | 3 (0.040) | 3/238 | NT | 3.2% | coding (859/1452 nt) | trkH | potassium transporter |
| ? | CP009273 | = 4027418 | 89 (1.090) | coding (914/1452 nt) | trkH | potassium transporter | |||||
| * | ? | CP009273 | = 3960293 | 90 (1.050) | 4 (0.050) | 4/242 | NT | 3.8% | coding (517/1260 nt) | rho | transcription termination factor |
| ? | CP009273 | = 3960333 | 115 (1.380) | coding (557/1260 nt) | rho | transcription termination factor | |||||
| * | ? | CP009273 | = 3955300 | 97 (1.130) | 4 (0.050) | 4/234 | NT | 4.3% | coding (1264/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| ? | CP009273 | = 3955339 | 86 (1.070) | coding (1303/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase | |||||