mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 35,746 | G→T | 9.3% | D139E (GAC→GAA) | caiD ← | carnitinyl‑CoA dehydratase |
| RA | 41,794 | G→T | 10.8% | Y46* (TAC→TAA) | caiT ← | putative transporter |
| RA | 95,432 | G→T | 6.3% | P181P (CCG→CCT) | ftsW → | lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division |
| RA | 170,006 | G→T | 12.8% | intergenic (+75/+83) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 170,019 | G→A | 13.5% | intergenic (+88/+70) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 179,593 | C→T | 5.7% | A215V (GCG→GTG) | cdaR → | carbohydrate diacid regulon transcriptional regulator; autoregulator |
| RA | 198,641 | G→A | 7.7% | P18P (CCG→CCA) | fabZ → | (3R)‑hydroxymyristol acyl carrier protein dehydratase |
| RA | 212,605 | G→A | 5.4% | intergenic (+139/+61) | nlpE → / ← yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein |
| RA | 218,062 | G→A | 5.5% | T16M (ACG→ATG) | metI ← | DL‑methionine transporter subunit |
| RA | 221,425 | T→C | 6.7% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 6.9% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 222,173 | T→C | 6.3% | intergenic (+111/‑73) | alaV → / → rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| RA | 250,297 | C→A | 10.4% | pseudogene (109/501 nt) | prfH → | pseudogene, RF‑1 domain family; probable peptide chain release factor |
| RA | 262,526 | C→T | 13.0% | pseudogene (153/192 nt) | ykfK ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related |
| RA | 262,529 | C→T | 11.8% | pseudogene (150/192 nt) | ykfK ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related |
| RA | 262,559 | C→T | 12.9% | pseudogene (120/192 nt) | ykfK ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related |
| RA | 262,565 | A→G | 11.6% | pseudogene (114/192 nt) | ykfK ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator;Phage or Prophage Related |
| RA | 263,285 | G→A | 7.4% | D144D (GAC→GAT) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 274,084 | G→A | 5.2% | R144C (CGC→TGC) | afuC ← | CP4‑6 prophage; putative ferric transporter subunit |
| RA | 302,342 | C→T | 5.7% | G63S (GGT→AGT) | ecpD ← | polymerized tip adhesin of ECP fibers |
| RA | 309,261 | G→T | 7.2% | intergenic (‑308/+166) | ykgR ← / ← ykgP | uncharacterized protein/pseudogene, oxidoreductase family |
| RA | 345,326 | T→C | 5.1% | intergenic (+43/‑397) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 345,353 | A→G | 5.9% | intergenic (+70/‑370) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 347,206 | C→T | 8.2% | A94V (GCG→GTG) | prpD → | 2‑methylcitrate dehydratase |
| RA | 353,317 | C→T | 7.5% | intergenic (+152/+185) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 362,443 | G→A | 6.2% | R71* (CGA→TGA) | mhpR ← | mhp operon transcriptional activator |
| RA | 370,428 | T→C | 7.3% | intergenic (+91/‑487) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,430 | A→G | 5.3% | intergenic (+93/‑485) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,442 | T→C | 9.4% | intergenic (+105/‑473) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,576 | Δ1 bp | 7.5% | intergenic (+239/‑339) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,577 | T→G | 8.7% | intergenic (+240/‑338) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 370,632 | A→G | 6.4% | intergenic (+295/‑283) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 372,807 | Δ1 bp | 8.2% | intergenic (+40/+184) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 372,808 | G→A | 8.1% | intergenic (+41/+183) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 389,367 | C→A | 5.7% | pseudogene (942/1449 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 410,069 | G→A | 5.4% | H381Y (CAT→TAT) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 445,212 | C→T | 89.2% | G296S (GGT→AGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 463,374 | T→C | 6.9% | R169R (CGT→CGC) | cof → | thiamine pyrimidine pyrophosphate hydrolase; HMP‑PP phosphatase |
| RA | 492,608 | C→A | 6.9% | intergenic (+158/‑23) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| RA | 494,564 | C→T | 7.3% | G289D (GGC→GAC) | aes ← | acetyl esterase |
| RA | 526,113 | C→A | 8.7% | A190A (GCG→GCT) | mnmH ← | tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
| RA | 539,163 | C→T | 5.4% | G114S (GGC→AGC) | allE ← | S‑ureidoglycine aminohydrolase |
| RA | 573,883 | G→C | 13.0% | T107T (ACG→ACC) R34P (CGG→CCG) |
rzpD → rzoD → |
DLP12 prophage; putative murein endopeptidase DLP12 prophage; putative lipoprotein |
| RA | 583,819 | G→T | 8.2% | G864G (GGC→GGA) | nfrA ← | bacteriophage N4 receptor, outer membrane subunit |
| RA | 605,602 | A→G | 9.9% | intergenic (‑67/+108) | entD ← / ← fepA | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter |
| RA | 605,605:1 | +A | 7.8% | intergenic (‑70/+105) | entD ← / ← fepA | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex/iron‑enterobactin outer membrane transporter |
| RA | 611,208 | G→A | 7.1% | W532* (TGG→TGA) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 648,609 | C→A | 6.0% | R307S (CGT→AGT) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 697,528 | C→A | 8.6% | R227L (CGT→CTT) | nagA ← | N‑acetylglucosamine‑6‑phosphate deacetylase |
| RA | 726,319 | G→C | 5.1% | A427A (GCG→GCC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,171 | T→G | 7.2% | N711K (AAT→AAG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,174 | C→T | 7.0% | G712G (GGC→GGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,207 | C→T | 8.3% | R723R (CGC→CGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,285 | C→G | 6.4% | R749R (CGC→CGG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 6.4% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 729,930 | A→G | 7.0% | pseudogene (342/1521 nt) | rhsO → | pseudogene, Rhs family protein |
| RA | 733,986 | A→G | 5.5% | K147E (AAG→GAG) | ybfD → | H repeat‑associated putative transposase |
| RA | 733,994 | C→T | 6.4% | S149S (TCC→TCT) | ybfD → | H repeat‑associated putative transposase |
| RA | 734,003 | C→T | 5.6% | I152I (ATC→ATT) | ybfD → | H repeat‑associated putative transposase |
| RA | 787,254 | C→A | 5.8% | V86V (GTG→GTT) | galE ← | UDP‑galactose‑4‑epimerase |
| RA | 811,070 | A→G | 9.3% | intergenic (+67/+125) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 811,071 | T→C | 9.3% | intergenic (+68/+124) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 811,072 | T→C | 9.4% | intergenic (+69/+123) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 811,073 | T→A | 9.3% | intergenic (+70/+122) | uvrB → / ← ybhK | excinulease of nucleotide excision repair, DNA damage recognition component/putative NAD(P)‑binding transferase |
| RA | 856,008 | G→T | 11.3% | T685T (ACC→ACA) | ybiW ← | putative pyruvate formate lyase |
| RA | 904,679 | C→T | 7.3% | P24P (CCG→CCA) | ltaE ← | L‑allo‑threonine aldolase, PLP‑dependent |
| RA | 913,880 | C→A | 6.7% | A233S (GCC→TCC) | ybjX ← | DUF535 family protein |
| RA | 920,211 | G→A | 6.4% | G498R (GGG→AGG) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 931,482 | G→T | 14.6% | G935C (GGT→TGT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 941,426 | G→A | 6.9% | A34T (GCC→ACC) | ycaD → | putative MFS‑type transporter |
| RA | 947,571 | C→G | 6.5% | M480I (ATG→ATC) ‡ | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 947,573 | T→G | 6.7% | M480L (ATG→CTG) ‡ | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 947,576 | G→T | 7.4% | R479S (CGC→AGC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 947,577 | C→G | 6.5% | E478D (GAG→GAC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 960,205 | G→T | 5.9% | D144Y (GAT→TAT) | ycaI → | ComEC family inner membrane protein |
| RA | 1,001,641 | G→T | 17.4% | V78V (GTG→GTT) | zapC → | FtsZ stabilizer |
| RA | 1,026,004 | G→A | 5.6% | P41S (CCG→TCG) | tusE ← | mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 1,045,283 | T→G | 10.0% | intergenic (‑83/‑6) | gfcA ← / → insA | O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA |
| RA | 1,047,768 | G→T | 5.8% | Q351K (CAA→AAA) | yccM ← | putative 4Fe‑4S membrane protein |
| RA | 1,053,762 | G→T | 5.3% | A75S (GCT→TCT) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,083,810 | G→T | 7.0% | Q502K (CAA→AAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,105,819 | G→T | 7.2% | W343C (TGG→TGT) | opgG → | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
| RA | 1,186,761 | G→T | 5.4% | Q228K (CAG→AAG) | purB ← | adenylosuccinate lyase |
| RA | 1,197,850 | T→C | 8.0% | E180E (GAA→GAG) | cohE ← | e14 prophage; repressor protein phage e14 |
| RA | 1,204,059 | C→T | 5.2% | A173T (GCT→ACT) | tfaE ← | e14 prophage; putative tail fiber assembly protein |
| RA | 1,218,978 | C→T | 6.6% | intergenic (+73/‑42) | ymgJ → / → ycgI | uncharacterized protein/pseudogene |
| RA | 1,254,576 | G→T | 7.8% | intergenic (+51/+4) | ychH → / ← dauA | DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter |
| RA | 1,255,129 | G→A | 7.8% | S377S (TCC→TCT) | dauA ← | C4‑dicarboxylic acid transporter |
| RA | 1,265,875 | T→C | 6.2% | noncoding (27/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,265,888 | T→G | 6.3% | noncoding (40/68 nt) | rdlC → | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| RA | 1,268,123 | C→A | 5.5% | S54* (TCG→TAG) | chaC → | cation transport regulator |
| RA | 1,282,249 | A→G | 8.8% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,430 | C→T | 7.1% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,495 | T→G | 6.5% | intergenic (+513/+27) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,497 | A→G | 8.3% | intergenic (+515/+25) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,498 | G→A | 5.6% | intergenic (+516/+24) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,288,276 | C→A | 91.9% | V35F (GTT→TTT) | hns ← | global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,302,400 | G→A | 5.4% | A168V (GCT→GTT) | clsA ← | cardiolipin synthase 1 |
| RA | 1,351,604 | G→T | 7.0% | intergenic (‑237/+76) | sapA ← / ← ymjA | antimicrobial peptide transport ABC transporter periplasmic binding protein/DUF2543 family protein |
| RA | 1,355,936 | C→A | 6.8% | A187E (GCG→GAG) | puuD → | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,403,860 | C→A | 7.3% | A31A (GCC→GCA) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
| RA | 1,417,031 | T→C | 8.3% | pseudogene (74/500 nt) | ydaW → | Rac prophage; pseudogene, DNA‑binding protein family;Phage or Prophage Related |
| RA | 1,417,147 | G→T | 10.8% | pseudogene (190/500 nt) | ydaW → | Rac prophage; pseudogene, DNA‑binding protein family;Phage or Prophage Related |
| RA | 1,422,060 | G→C | 8.7% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,150 | C→T | 6.3% | pseudogene (834/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,252 | A→G | 6.0% | pseudogene (732/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,627 | A→G | 5.4% | pseudogene (357/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,648 | G→C | 6.2% | pseudogene (336/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,798 | A→G | 5.8% | pseudogene (186/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,435,640 | G→T | 6.0% | Q121K (CAG→AAG) | hslJ ← | heat‑inducible lipoprotein involved in novobiocin resistance |
| RA | 1,460,819 | G→A | 8.1% | pseudogene (1171/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,477,945 | C→A | 5.6% | L210I (CTC→ATC) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,532,695 | C→A | 7.0% | W139L (TGG→TTG) | narY ← | nitrate reductase 2 (NRZ), beta subunit |
| RA | 1,546,447 | T→C | 17.1% | intergenic (+199/+208) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,546,448 | C→T | 16.7% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,593,583 | C→A | 7.1% | R295L (CGC→CTC) | lsrK ← | autoinducer‑2 (AI‑2) kinase |
| RA | 1,639,188 | C→T | 6.3% | intergenic (‑29/+188) | rem ← / ← hokD | Qin prophage; uncharacterized protein/Qin prophage; small toxic polypeptide |
| RA | 1,663,488 | G→T | 5.0% | P121H (CCT→CAT) | ynfL ← | LysR family putative transcriptional regulator |
| RA | 1,666,107 | Δ1 bp | 5.2% | coding (74/84 nt) | ydgU → | stationary phase‑induced protein |
| RA | 1,672,050 | G→A | 10.0% | S37S (AGC→AGT) | pntA ← | pyridine nucleotide transhydrogenase, alpha subunit |
| RA | 1,681,696 | A→G | 11.0% | G313G (GGT→GGC) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,729 | G→A | 6.4% | R302R (CGC→CGT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,732 | A→G | 6.1% | I301I (ATT→ATC) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,735 | C→A | 6.3% | V300V (GTG→GTT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,681,741 | G→A | 6.3% | I298I (ATC→ATT) | fumA ← | fumarate hydratase (fumarase A), aerobic Class I |
| RA | 1,696,039 | G→T | 17.2% | A276S (GCC→TCC) | malY → | bifunctional beta‑cystathionase, PLP‑dependent/ regulator of maltose regulon |
| RA | 1,702,966 | T→C | 9.7% | R597R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,710,193 | C→A | 9.3% | intergenic (‑47/+12) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,712,204 | C→A | 6.3% | G21W (GGG→TGG) | pdxH ← | pyridoxine 5'‑phosphate oxidase |
| RA | 1,717,339 | G→T | 7.2% | C321F (TGC→TTC) | ydhK → | putative efflux protein (PET) component of YdhJK efflux pump |
| RA | 1,720,418 | C→A | 7.8% | H47N (CAC→AAC) | nemR → | transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated |
| RA | 1,760,891 | G→T | 5.6% | P684P (CCC→CCA) | ydiJ ← | putative FAD‑linked oxidoreductase |
| RA | 1,785,882 | G→T | 8.7% | S132S (TCC→TCA) | ydiV ← | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase |
| RA | 1,789,696 | C→A | 7.5% | L38L (CTG→CTT) | ihfA ← | integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,845,784 | C→G | 6.7% | A223G (GCT→GGT) | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,851,318 | C→T | 5.8% | A237T (GCA→ACA) | ydjI ← | putative aldolase |
| RA | 1,868,111 | C→T | 5.9% | A94V (GCC→GTC) | yeaK → | aminoacyl‑tRNA editing domain protein |
| RA | 1,875,344 | Δ1 bp | 7.5% | coding (723/924 nt) | dmlR ← | transcriptional activator of dmlA |
| RA | 1,881,943 | G→T | 9.8% | D102E (GAC→GAA) | rnd ← | ribonuclease D |
| RA | 1,944,104 | G→T | 6.4% | Q226K (CAG→AAG) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,945,807 | G→A | 5.2% | E52E (GAG→GAA) | yecE → | UPF0759 family protein |
| RA | 1,948,722 | A→G | 5.6% | intergenic (+52/+113) | cmoB → / ← torZ | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,948,724 | C→T | 6.7% | intergenic (+54/+111) | cmoB → / ← torZ | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,948,730 | T→A | 9.5% | intergenic (+60/+105) | cmoB → / ← torZ | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 2,024,400 | G→T | 7.3% | H467N (CAT→AAT) | dcm ← | DNA cytosine methyltransferase |
| RA | 2,054,474 | C→A | 5.1% | intergenic (‑79/+23) | cbl ← / ← nac | ssuEADCB/tauABCD operon transcriptional activator/nitrogen assimilation regulon transcriptional regulator; autorepressor |
| RA | 2,059,656 | T→C | 10.3% | intergenic (‑21/+130) | yeeH ← / ← insH1 | pseudogene/IS5 transposase and trans‑activator |
| RA | 2,122,049 | G→T | 6.6% | C107* (TGC→TGA) | wcaF ← | putative acyl transferase |
| RA | 2,135,624 | C→T | 5.4% | V25M (GTG→ATG) | dcd ← | 2'‑deoxycytidine 5'‑triphosphate deaminase |
| RA | 2,176,543 | T→C | 6.6% | S196S (TCA→TCG) | yegX ← | putative family 25 glycosyl hydrolase |
| RA | 2,217,525 | G→A | 5.5% | T275T (ACC→ACT) | pbpG ← | D‑alanyl‑D‑alanine endopeptidase |
| RA | 2,231,008 | C→A | 7.1% | Q75H (CAG→CAT) | mglC ← | methyl‑galactoside transporter subunit |
| RA | 2,298,128 | C→T | 8.0% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,329,334 | C→A | 7.2% | A264S (GCC→TCC) | yfaA ← | DUF2138 family protein, putative host defense protein |
| RA | 2,344,724 | G→A | 5.7% | P377L (CCG→CTG) | glpT ← | sn‑glycerol‑3‑phosphate transporter |
| RA | 2,352,929 | G→T | 6.6% | L235M (CTG→ATG) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,363,545 | C→A | 6.4% | R17S (CGT→AGT) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| RA | 2,382,688 | G→T | 11.4% | D32Y (GAT→TAT) | yfbP → | TPR‑like repeats‑containing protein |
| RA | 2,406,982 | G→T | 7.3% | G12C (GGT→TGT) | ackA → | acetate kinase A and propionate kinase 2 |
| RA | 2,465,527 | C→T | 6.4% | pseudogene (75/579 nt) | yfdL ← | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related |
| RA | 2,532,009 | C→A | 5.7% | intergenic (+167/+22) | yfeS → / ← cysM | WGR domain protein/cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,544,750 | G→A | 8.0% | N112N (AAC→AAT) | yfeZ ← | inner membrane protein |
| RA | 2,548,112 | G→A | 5.3% | L144F (CTT→TTT) | eutR ← | eut operon transcriptional activator, AraC family |
| RA | 2,559,397 | C→A | 5.5% | G283C (GGC→TGC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,561,558 | A→G | 5.7% | intergenic (‑92/+125) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, converts acetaldehyde to ethanol |
| RA | 2,561,563 | G→T | 7.0% | intergenic (‑97/+120) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, converts acetaldehyde to ethanol |
| RA | 2,574,761 | C→A | 6.9% | D589E (GAC→GAA) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,644,122 | C→A | 7.2% | V509L (GTG→TTG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,650,475 | G→A | 5.8% | A607V (GCG→GTG) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,650,497 | T→C | 5.3% | M600V (ATG→GTG) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,694,897 | C→A | 9.8% | T64T (ACG→ACT) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
| RA | 2,707,703 | C→T | 7.6% | intergenic (+114/+95) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,756,549 | G→A | 5.6% | N117N (AAC→AAT) | yfjK ← | DEAD/H helicase‑like protein, CP4‑57 putative defective prophage |
| RA | 2,761,218 | T→C | 5.2% | S50S (AGT→AGC) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,761,224 | T→G | 5.8% | L52L (CTT→CTG) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,762,404 | T→G | 6.6% | G127G (GGT→GGG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,762,984 | T→G | 6.2% | intergenic (+139/‑78) | yfjQ → / → yfjR | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,803,255 | G→T | 5.3% | G94C (GGC→TGC) | ygaZ → | putative L‑valine exporter, norvaline resistance protein |
| RA | 2,811,408 | T→A | 11.1% | intergenic (‑189/+10) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,812,752 | C→T | 5.3% | A873A (GCG→GCA) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,838,796 | G→T | 5.6% | T345T (ACC→ACA) | hycE ← | hydrogenase 3, large subunit |
| RA | 2,851,711 | C→T | 5.5% | R420R (CGC→CGT) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,861,411 | C→A | 10.9% | A234A (GCG→GCT) | nlpD ← | activator of AmiC murein hydrolase activity, lipoprotein |
| RA | 2,876,632 | T→C | 6.1% | K289R (AAG→AGG) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,876,635 | A→T | 6.2% | V288D (GTC→GAC) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,876,638 | G→C | 5.6% | T287R (ACA→AGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,905,225 | G→A | 6.0% | R596C (CGC→TGC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,929,313 | C→T | 7.4% | A124V (GCT→GTT) | fucI → | L‑fucose isomerase |
| RA | 2,937,056 | G→A | 7.0% | A121T (GCC→ACC) | csdA → | cysteine sulfinate desulfinase |
| RA | 2,958,661 | G→A | 5.9% | R246C (CGC→TGC) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,962,699 | C→T | 6.2% | intergenic (‑363/‑322) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
| RA | 2,963,688 | C→T | 6.7% | A223V (GCC→GTC) | mutH → | methyl‑directed mismatch repair protein |
| RA | 2,970,855 | G→A | 9.3% | A300T (GCC→ACC) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 3,031,998 | C→A | 8.2% | D62Y (GAT→TAT) | dsbC ← | protein disulfide isomerase II |
| RA | 3,046,394 | C→A | 6.8% | D162Y (GAT→TAT) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,058,429 | G→A | 5.3% | G90D (GGT→GAT) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,063,427 | A→C | 9.6% | intergenic (‑261/+97) | mscS ← / ← fbaA | mechanosensitive channel protein, small conductance/fructose‑bisphosphate aldolase, class II |
| RA | 3,064,674 | C→T | 5.7% | intergenic (‑71/+144) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,064,708 | G→C | 8.8% | intergenic (‑105/+110) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,064,718 | T→G | 18.9% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,072,806 | A→G | 100% | intergenic (‑117/+197) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,108,596 | C→T | 5.2% | P1292P (CCG→CCA) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,110,096 | C→T | 6.6% | P792P (CCG→CCA) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,138,739 | G→T | 5.0% | G294G (GGC→GGA) | hybO ← | hydrogenase 2, small subunit |
| RA | 3,145,031 | C→T | 7.0% | E105K (GAA→AAA) | exbB ← | membrane spanning protein in TonB‑ExbB‑ExbD complex |
| RA | 3,151,338 | G→T | 7.3% | V110V (GTG→GTT) | yqhG → | DUF3828 family putative periplasmic protein |
| RA | 3,221,494 | G→T | 20.9% | S112I (AGC→ATC) | ygjJ → | putative periplasmic protein |
| RA | 3,242,676 | C→A | 6.6% | L117M (CTG→ATG) | yqjC → | DUF1090 family putative periplasmic protein |
| RA | 3,255,041 | C→T | 5.3% | G246D (GGC→GAC) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| RA | 3,273,191 | C→A | 14.0% | L307M (CTG→ATG) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| RA | 3,364,651 | C→T | 6.1% | R428H (CGT→CAT) | nanT ← | sialic acid transporter |
| RA | 3,382,333 | C→T | 5.9% | A51A (GCG→GCA) | aaeA ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,386,723 | G→T | 5.8% | N965K (AAC→AAA) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,416,890 | T→G | 10.1% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 13.1% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,434,731 | C→T | 9.3% | V102I (GTA→ATA) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,449,325 | C→A | 5.2% | T130K (ACG→AAG) | gspC → | general secretory pathway component, cryptic |
| RA | 3,473,131 | C→T | 5.4% | G279D (GGC→GAC) | kefB ← | potassium:proton antiporter |
| RA | 3,514,643 | C→T | 6.9% | A56T (GCC→ACC) | hofO ← | DNA catabolic protein |
| RA | 3,542,745 | G→C | 5.4% | Q229E (CAG→GAG) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,553,170 | T→G | 8.2% | L515R (CTG→CGG) | rtcR → | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| RA | 3,563,959 | G→A | 6.7% | L241L (CTG→TTG) | glgX ← | glycogen debranching enzyme |
| RA | 3,599,873 | C→A | 8.0% | T21T (ACC→ACA) | zntA → | zinc, cobalt and lead efflux system |
| RA | 3,614,441 | G→T | 7.0% | G630G (GGG→GGT) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,618,160 | A→G | 10.8% | G141G (GGA→GGG) | yhhI → | putative transposase |
| RA | 3,621,309 | G→A | 6.0% | T530T (ACC→ACT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,715,667 | G→A | 7.8% | intergenic (+202/+21) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,755,089 | G→T | 12.3% | A76D (GCT→GAT) | yibF ← | glutathione S‑transferase homolog |
| RA | 3,758,971 | C→T | 5.3% | I1143I (ATC→ATT) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,780,627 | C→T | 6.6% | R144C (CGT→TGT) | envC → | activator of AmiB,C murein hydrolases, septal ring factor |
| RA | 3,780,636 | C→A | 6.5% | R147S (CGT→AGT) | envC → | activator of AmiB,C murein hydrolases, septal ring factor |
| RA | 3,813,650 | G→A | 7.5% | P294L (CCG→CTG) | ligB ← | DNA ligase, NAD(+)‑dependent |
| RA | 3,862,560 | A→C | 7.6% | L37R (CTG→CGG) | yidR ← | DUF3748 family protein |
| RA | 3,968,018 | C→A | 9.5% | F64L (TTC→TTA) | wecD → | TDP‑fucosamine acetyltransferase |
| RA | 3,992,746 | Δ1 bp | 6.0% | coding (1404/2163 nt) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,992,749 | G→T | 6.5% | A469A (GCG→GCT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,992,751 | Δ1 bp | 6.0% | coding (1409/2163 nt) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,992,752 | G→C | 6.0% | Q470H (CAG→CAC) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,992,754 | A→T | 6.0% | E471V (GAA→GTA) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,006,947 | G→T | 7.2% | D179Y (GAC→TAC) | metE → | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| RA | 4,154,887 | G→A | 6.9% | A441T (GCG→ACG) | btuB → | vitamin B12/cobalamin outer membrane transporter |
| RA | 4,156,331 | A→G | 17.1% | intergenic (+118/‑256) | murI → / → rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| RA | 4,161,576 | A→C | 9.2% | noncoding (12/120 nt) | rrfB → | 5S ribosomal RNA of rrnB operon |
| RA | 4,162,053 | C→T | 5.3% | A23A (GCC→GCT) | murB → | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,163,192 | T→C | 6.6% | P61P (CCT→CCC) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
| RA | 4,165,449 | C→T | 16.1% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 16.1% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,173,745 | G→A | 20.0% | G858D (GGT→GAT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,176,469 | A→G | 8.1% | K398E (AAG→GAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,500 | C→T | 55.1% | R1075C (CGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,185,954 | G→A | 5.4% | T25I (ACC→ATC) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,202,979 | A→C | 16.8% | noncoding (12/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,223,788 | G→A | 6.2% | G35S (GGC→AGC) | pgi → | glucosephosphate isomerase |
| RA | 4,235,122 | C→T | 7.0% | intergenic (‑119/+35) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,255,392 | A→G | 9.2% | Q384R (CAG→CGG) | dnaB → | replicative DNA helicase |
| RA | 4,286,196 | C→T | 6.6% | intergenic (+474/+57) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,297,526 | G→A | 8.7% | H31Y (CAC→TAC) | alsK ← | D‑allose kinase |
| RA | 4,298,886 | G→T | 11.8% | P134Q (CCG→CAG) | alsC ← | D‑allose transporter subunit |
| RA | 4,351,542 | C→A | 10.0% | Q70H (CAG→CAT) | cadC ← | cadBA operon transcriptional activator |
| RA | 4,368,392 | G→T | 5.1% | H124N (CAT→AAT) | ampC ← | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,368,905 | G→A | 5.5% | H93H (CAC→CAT) | frdD ← | fumarate reductase (anaerobic), membrane anchor subunit |
| RA | 4,398,146 | C→A | 7.3% | A559E (GCA→GAA) | rnr → | exoribonuclease R, RNase R |
| RA | 4,424,187 | G→A | 16.6% | P86P (CCG→CCA) | ytfH → | DUF24 family HxlR‑type putative transcriptional regulator |
| RA | 4,428,332 | C→T | 6.6% | A270V (GCG→GTG) | ytfI → | uncharacterized protein |
| RA | 4,483,882 | G→A | 8.9% | G114G (GGC→GGT) | idnD ← | L‑idonate 5‑dehydrogenase, NAD‑binding |
| RA | 4,508,444 | C→A | 7.4% | P34H (CCT→CAT) ‡ | insA → | IS1 repressor TnpA |
| RA | 4,508,445 | T→C | 7.6% | P34P (CCT→CCC) ‡ | insA → | IS1 repressor TnpA |
| RA | 4,508,466 | A→G | 6.7% | L41L (CTA→CTG) | insA → | IS1 repressor TnpA |
| RA | 4,508,660 | T→G | 5.8% | pseudogene (123/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,750 | G→T | 6.6% | pseudogene (213/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,897 | T→A | 9.0% | pseudogene (360/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,554,134 | C→G | 8.2% | G125R (GGC→CGC) | yjiL ← | putative ATPase, activator of (R)‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,554,136 | G→A | 8.1% | A124V (GCG→GTG) | yjiL ← | putative ATPase, activator of (R)‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,561,269 | G→A | 78.3% | S41S (AGC→AGT) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| RA | 4,562,725 | G→T | 10.0% | pseudogene (495/1503 nt) | yjiT → | pseudogene |
| RA | 4,598,741 | C→A | 5.1% | I93I (ATC→ATA) | yjjG → | dUMP phosphatase |
| RA | 4,604,397 | G→A | 7.0% | intergenic (+320/+100) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,628,905 | C→T | 7.6% | A304V (GCA→GTA) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 3448752 | 3448865 | 114 | 13 [9] | [3] 13 | [gspA] | [gspA] |
| * | * | ÷ | CP009273 | 3745284 | 3745346 | 63 | 12 [9] | [10] 12 | yiaT/yiaU | putative outer membrane protein/putative DNA‑binding transcriptional regulator |
| * | * | ÷ | CP009273 | 3763025 | 3763249 | 225 | 12 [9] | [11] 12 | [yibV]–yibV | [yibV],yibV |
| * | * | ÷ | CP009273 | 4323148 | 4323774 | 627 | 20 [3] | [11] 12 | [basR]–[eptA] | [basR],[eptA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 25796 | NA (NA) | 6 (0.100) | 4/246 | NT | NA | intergenic (+95/‑30) | lspA/fkpB | prolipoprotein signal peptidase (signal peptidase II)/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| ? | CP009273 | 372778 = | NA (NA) | intergenic (+11/+213) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 360104 = | 44 (0.710) | 58 (0.940) | 26/248 | NT | 56.9% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 370378 = | NA (NA) | 14 (0.240) | 5/232 | NT | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | 372785 = | NA (NA) | intergenic (+18/+206) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
| * | ? | CP009273 | 370386 = | NA (NA) | 16 (0.370) | 8/174 | NT | 16.1% | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 372878 = | 91 (1.920) | noncoding (88/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 30 (0.480) | 33 (0.610) | 23/216 | NT | 54.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 28 (0.520) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 28 (0.450) | 18 (0.330) | 10/216 | NT | 40.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 28 (0.520) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||