mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 37.9% | 20.5 / 29.4 | 66 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,598 | 0 | C | G | 30.3% | 167.5 / 16.7 | 76 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 4,402,656 | 0 | C | A | 25.8% | 114.1 / 19.4 | 66 | N151K (AAC→AAA) | yjfM | DUF1190 family protein |
| * | CP009273 | 4,402,596 | 0 | T | G | 25.3% | 150.4 / 17.9 | 75 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 104,041 | 0 | G | T | 24.3% | 143.3 / 15.5 | 70 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 838,658 | 0 | G | T | 24.3% | 108.9 / 10.1 | 70 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,042 | 0 | A | T | 23.5% | 180.5 / 14.8 | 69 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,404,729 | 0 | C | A | 23.5% | 165.2 / 29.5 | 98 | V35F (GTC→TTC) | yfbS | putative transporter |
| * | CP009273 | 838,652 | 0 | T | G | 22.7% | 141.8 / 14.3 | 75 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2353061 = | 85 (0.920) | 3 (0.030) | 3/250 | 7.1 | 3.5% | coding (571/1290 nt) | rhmT | putative L‑rhamnonate transporter |
| ? | CP009273 | 3025086 = | 85 (0.980) | coding (361/1449 nt) | uacT | uric acid permease | |||||
| * | ? | CP009273 | = 1110903 | 106 (1.150) | 3 (0.030) | 3/260 | 7.3 | 3.1% | coding (44/1227 nt) | mdtG | putative drug efflux system protein |
| ? | CP009273 | = 3946470 | 84 (0.930) | coding (627/930 nt) | ilvE | branched‑chain amino‑acid aminotransferase | |||||
| * | ? | CP009273 | = 1964057 | 92 (1.000) | 3 (0.030) | 3/266 | 7.4 | 2.9% | coding (1185/1602 nt) | tap | methyl‑accepting protein IV |
| ? | CP009273 | 1964062 = | 107 (1.160) | coding (1180/1602 nt) | tap | methyl‑accepting protein IV | |||||
| * | ? | CP009273 | = 266498 | NA (NA) | 3 (0.030) | 3/266 | 7.4 | 3.1% | coding (185/1152 nt) | insI1 | IS30 transposase |
| ? | CP009273 | = 267082 | 93 (1.010) | coding (769/1152 nt) | insI1 | IS30 transposase | |||||
| * | ? | CP009273 | = 257519 | 75 (0.810) | 5 (0.050) | 3/262 | 7.4 | 6.4% | coding (306/1254 nt) | proA | gamma‑glutamylphosphate reductase |
| ? | CP009273 | 257524 = | 73 (0.800) | coding (311/1254 nt) | proA | gamma‑glutamylphosphate reductase | |||||