mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,178,209 | 0 | C | A | 45.5% | ‑1.8 / 29.2 | 22 | R978S (CGT→AGT) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 723,765 | 0 | C | T | 40.0% | 5.9 / 14.8 | 15 | A142T (GCC→ACC) | kdpA | potassium translocating ATPase, subunit A |
| * | CP009273 | 1,622,911 | 0 | G | T | 30.8% | 20.3 / 20.8 | 26 | A101A (GCG→GCT) | rspR | transcriptional repressor for rspAB |
| * | CP009273 | 3,488,742 | 0 | G | C | 23.1% | 58.4 / 16.4 | 26 | G458A (GGC→GCC) | nirB | nitrite reductase, large subunit, NAD(P)H‑binding |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 370385 | 33 (1.970) | 5 (0.330) | 4/182 | 1.0 | 14.3% | intergenic (+48/‑530) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | = 372977 | NA (NA) | noncoding (187/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 776162 = | 31 (1.380) | 4 (0.220) | 4/220 | 1.3 | 19.8% | intergenic (+77/‑59) | lysT/valT | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | = 777240 | 7 (0.380) | intergenic (+132/‑301) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | = 370414 | 41 (1.830) | 3 (0.180) | 3/194 | 1.4 | 12.3% | noncoding (29/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | = 372848 | 13 (0.800) | noncoding (58/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 4363103 = | 25 (1.370) | 8 (0.440) | 3/218 | 1.6 | 24.2% | noncoding (90/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4364325 = | NA (NA) | noncoding (11/99 nt) | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 512781 = | NA (NA) | 3 (0.140) | 3/258 | 1.8 | 15.8% | coding (743/780 nt) | fetB | iron exporter permease subunit, ABC transporter FetAB; peroxide resistance protein |
| ? | CP009273 | = 3256777 | 16 (0.740) | coding (243/1209 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | CP009273 | = 2637161 | 29 (1.290) | 4 (0.180) | 3/268 | 1.9 | 14.5% | coding (482/1155 nt) | rlmN | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| ? | CP009273 | = 3190618 | 18 (0.800) | coding (2383/2841 nt) | glnE | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase | |||||