mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,901,886 | 0 | A | C | 52.4% | 10.2 / 18.3 | 21 | intergenic (‑160/+23) | pstB/pstA | phosphate transporter subunit/phosphate transporter subunit |
| * | CP009273 | 2,399,955 | 0 | C | A | 35.3% | 7.4 / 14.2 | 17 | E56* (GAA→TAA) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| * | CP009273 | 3,416,899 | 0 | A | G | 30.2% | 68.9 / 35.8 | 43 | noncoding (3/120 nt) | rrfF | 5S ribosomal RNA of rrnD operon |
| * | CP009273 | 1,768,812 | 0 | A | . | 28.6% | 35.1 / 11.8 | 14 | coding (767/867 nt) | ydiB | quinate/shikimate 5‑dehydrogenase, NAD(P)‑binding |
| * | CP009273 | 763,405 | 0 | G | T | 25.0% | 68.4 / 10.3 | 44 | V656L (GTA→TTA) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| * | CP009273 | 1,979,516 | 0 | C | . | 23.5% | 39.5 / 12.6 | 17 | coding (94/990 nt) | araF | L‑arabinose transporter subunit |
| * | CP009273 | 1,315,881 | 0 | C | T | 23.1% | 51.4 / 12.6 | 27 | A441A (GCG→GCA) | trpE | component I of anthranilate synthase |
| * | CP009273 | 85,999 | 0 | T | C | 20.0% | 66.0 / 12.8 | 30 | intergenic (+480/‑122) | cra/mraZ | transcriptional repressor‑activator for carbon metabolism/RsmH methytransferase inhibitor |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3710896 = | 10 (0.520) | 3 (0.160) | 3/264 | 1.4 | 9.4% | coding (227/975 nt) | ghrB | glyoxylate/hydroxypyruvate reductase B |
| ? | CP009273 | = 3714441 | 48 (2.550) | coding (402/522 nt) | insJ | IS150 transposase A | |||||
| * | ? | CP009273 | = 3646053 | NA (NA) | 3 (0.160) | 3/264 | 1.4 | 10.5% | noncoding (538/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 4574803 = | 26 (1.360) | pseudogene (1830/3567 nt) | hsdR | pseudogene, premature stop codon, host restriction; endonuclease R | |||||