breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
RA 445,212 C→T G296S (GGT→AGT)  cyoB ← cytochrome o ubiquinol oxidase subunit I
RA 1,288,276 C→A V35F (GTT→TTT)  hns ← global DNA‑binding transcriptional dual regulator H‑NS
RA 2,719,426 T→C intergenic (‑321/+2) kgtP ← / ← rrfG alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon
RA 3,072,806 A→G intergenic (‑117/+197) cmtB ← / ← tktA putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding
RA 4,178,209 C→T R978C (CGT→TGT)  rpoC → RNA polymerase, beta prime subunit
RA 4,561,269 G→A S41S (AGC→AGT)  yjiR ← putative DNA‑binding transcriptional regulator/putative aminotransferase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 4323055 4323817 763 31 [30] [30] 44 [basS]–[eptA] [basS],basR,[eptA]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 360104 =100 (1.010)129 (1.310) 55/268 0.1 56.3% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 NA (NA)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 1203246 =8 (0.080)73 (0.840) 31/236 0.7 90.1% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 1205075 = 9 (0.100)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? CP009273 = 12032618 (0.080)89 (1.020) 38/236 0.4 91.7% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 = 1205058 9 (0.100)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related