mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 38.8% | 35.8 / 78.3 | 103 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 161,068 | 0 | A | C | 31.9% | 23.2 / 11.7 | 47 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | CP009273 | 1,160,024 | 0 | G | C | 30.9% | 165.3 / 15.2 | 88 | M158I (ATG→ATC) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 2,178,908 | 0 | T | G | 27.1% | 195.0 / 23.5 | 107 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 1,159,994 | 0 | G | T | 26.8% | 170.4 / 10.8 | 97 | R148R (CGG→CGT) ‡ | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 2,222,692 | 0 | G | C | 21.3% | 235.9 / 33.9 | 89 | intergenic (+148/+225) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | CP009273 | 1,159,992 | 0 | C | G | 21.2% | 246.6 / 27.6 | 99 | R148G (CGG→GGG) ‡ | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 104,041 | 0 | G | T | 20.7% | 127.2 / 10.5 | 59 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 1,159,981 | 0 | C | A | 20.6% | 201.9 / 15.1 | 98 | A144E (GCA→GAA) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 2,170,728 | 0 | T | A | 20.4% | 222.2 / 14.8 | 93 | intergenic (‑45/+263) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,672 | 0 | G | T | 20.2% | 203.9 / 16.8 | 94 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1716873 = | 125 (0.960) | 10 (0.080) | 8/246 | 6.3 | 7.9% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | CP009273 | = 1716869 | 118 (0.990) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | CP009273 | = 680998 | 167 (1.290) | 5 (0.040) | 5/244 | 7.6 | 3.0% | coding (388/675 nt) | gltK | glutamate, aspartate ABC transporter permease subunit |
| ? | CP009273 | 681697 = | 175 (1.480) | coding (429/741 nt) | gltJ | glutamate, aspartate ABC transporter permease subunit | |||||
| * | ? | CP009273 | = 2897644 | 249 (1.920) | 3 (0.030) | 3/210 | 8.0 | 1.7% | intergenic (+911/+462) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| ? | CP009273 | 2897767 = | 147 (1.450) | intergenic (+1034/+339) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis | |||||
| * | ? | CP009273 | = 4532507 | 65 (0.500) | 3 (0.020) | 3/250 | 8.9 | 3.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 103 (0.850) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 2555236 = | 114 (0.880) | 3 (0.020) | 3/260 | 9.1 | 2.4% | coding (253/369 nt) | yffN | CPZ‑55 prophage; uncharacterized protein |
| ? | CP009273 | 4239601 = | 130 (1.030) | coding (120/921 nt) | malM | maltose regulon periplasmic protein | |||||
| * | ? | CP009273 | 224425 = | NA (NA) | 3 (0.020) | 3/262 | 9.2 | 3.5% | noncoding (2180/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 1221077 | 85 (0.650) | coding (460/696 nt) | minC | cell division inhibitor | |||||
| * | ? | CP009273 | = 3554702 | 132 (1.020) | 3 (0.020) | 3/266 | 9.3 | 2.0% | coding (111/831 nt) | glpG | rhomboid intramembrane serine protease |
| ? | CP009273 | 3554709 = | 159 (1.230) | coding (104/831 nt) | glpG | rhomboid intramembrane serine protease | |||||
| * | ? | CP009273 | = 2730263 | 98 (0.750) | 5 (0.040) | 3/266 | 9.3 | 4.2% | intergenic (+21/‑250) | bamD/raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| ? | CP009273 | = 4189971 | 133 (1.030) | coding (540/591 nt) | yjaG | DUF416 domain protein | |||||