mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 68,486 | T→G | 13.9% | L217V (TTG→GTG) | yabI → | DedA family inner membrane protein |
| RA | 161,068 | A→C | 24.7% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 221,420 | A→G | 5.1% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 5.3% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 5.4% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 6.2% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 357,060 | T→G | 9.8% | N171T (AAC→ACC) | lacA ← | thiogalactoside acetyltransferase |
| RA | 418,995 | T→G | 14.1% | L341R (CTG→CGG) | malZ → | maltodextrin glucosidase |
| RA | 445,212 | C→T | 100% | G296S (GGT→AGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 838,652 | T→G | 12.8% | F289V (TTT→GTT) | rlmF → | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| RA | 910,671 | T→G | 8.3% | intergenic (‑358/+137) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 1,288,276 | C→A | 100% | V35F (GTT→TTT) | hns ← | global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 1,320,988 | T→G | 9.0% | intergenic (+90/‑121) | yciQ → / → rluB | enhancer of membrane protein expression; putative inner membrane protein/23S rRNA pseudouridine(2605) synthase |
| RA | 1,364,326 | A→C | 6.9% | intergenic (+66/‑147) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 2,170,724 | G→T | 16.0% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,298,128 | C→T | 6.2% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,707,492 | A→C | 5.6% | K413T (AAG→ACG) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,832,598 | T→G | 5.3% | K9T (AAG→ACG) | ascG ← | asc operon transcriptional repressor; prpBC operon repressor |
| RA | 3,072,806 | A→G | 100% | intergenic (‑117/+197) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,119,692 | T→G | 5.8% | T64P (ACC→CCC) | glcE ← | glycolate oxidase FAD binding subunit |
| RA | 3,525,180 | T→G | 5.1% | I207L (ATC→CTC) | yhgE ← | DUF4153 family putative inner membrane protein |
| RA | 3,525,235 | C→A | 5.5% | T188T (ACG→ACT) | yhgE ← | DUF4153 family putative inner membrane protein |
| RA | 3,822,340 | A→C | 9.9% | Q12H (CAA→CAC) | xanP → | xanthine permease |
| RA | 3,901,867 | T→G | 5.8% | intergenic (‑141/+42) | pstB ← / ← pstA | phosphate transporter subunit/phosphate transporter subunit |
| RA | 3,991,416 | T→G | 9.8% | L25R (CTT→CGT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,173,307 | C→T | 8.5% | S712F (TCC→TTC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,177,142 | A→G | 9.0% | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,209 | C→T | 37.7% | R978C (CGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,178,501 | G→T | 21.8% | R1075L (CGT→CTT) | rpoC → | RNA polymerase, beta prime subunit |
| JC | 4,178,889 | (GAACGTGTA)1→2 | 16.9% | coding (3612/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,561,269 | G→A | 100% | S41S (AGC→AGT) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 4323073 | 4323787 | 715 | 86 [83] | [83] 87 | [basS]–[eptA] | [basS],basR,[eptA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 244 (0.940) | 319 (1.230) | 70/248 | NT | 56.7% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | 1203246 = | 115 (0.440) | 156 (0.690) | 54/216 | NT | 67.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 48 (0.210) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 108 (0.410) | 153 (0.680) | 46/216 | NT | 68.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 48 (0.210) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||