mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,808 | (T)8→7 | intergenic (+177/‑15) | kefC → / → folA | potassium:proton antiporter/dihydrofolate reductase |
| RA | 445,212 | C→T | G296S (GGT→AGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 1,288,276 | C→A | V35F (GTT→TTT) | hns ← | global DNA‑binding transcriptional dual regulator H‑NS |
| RA | 2,719,426 | T→C | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 3,072,806 | A→G | intergenic (‑117/+197) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 4,177,142 | A→G | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,561,269 | G→A | S41S (AGC→AGT) | yjiR ← | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 4323062 | 4323793 | 732 | 20 [17] | [17] 19 | [basS]–[eptA] | [basS],basR,[eptA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 74 (1.100) | 121 (1.810) | 47/270 | 0.1 | 62.1% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 1463497 | NA (NA) | 29 (0.430) | 20/270 | 1.3 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 1580740 = | 0 (0.000) | coding (4/2280 nt) | ydeP | putative oxidoreductase | |||||
| * | ? | CP009273 | = 1580745 | 2 (0.030) | 63 (0.950) | 34/268 | 0.3 | 97.0% | intergenic (‑2/+332) | ydeP/ydeQ | putative oxidoreductase/putative fimbrial‑like adhesin protein |
| ? | CP009273 | = 1645804 | NA (NA) | intergenic (+10/‑4) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||