mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,178,501 | 0 | G | T | 45.2% | 40.3 / 103.5 | 84 | R1075L (CGT→CTT) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 3,434,282 | 0 | C | A | 35.3% | 113.3 / 105.7 | 102 | G36V (GGC→GTC) | rpoA | RNA polymerase, alpha subunit |
| * | CP009273 | 1,859,025 | 0 | T | C | 23.8% | 75.7 / 23.8 | 43 | intergenic (+34/+14) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| * | CP009273 | 1,859,020 | 0 | A | T | 22.7% | 76.9 / 24.8 | 44 | intergenic (+29/+19) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| * | CP009273 | 1,859,015 | 0 | G | A | 20.8% | 105.5 / 20.6 | 49 | intergenic (+24/+24) | yeaD/yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| Marginal new junction evidence (lowest skew 10 of 210 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 746073 = | 68 (0.880) | 18 (0.250) | 17/254 | 4.9 | 23.3% | coding (1553/2448 nt) | ybgQ | putative outer membrane protein |
| ? | CP009273 | 746125 = | 54 (0.740) | coding (1501/2448 nt) | ybgQ | putative outer membrane protein | |||||
| * | ? | CP009273 | = 2060348 | 8 (0.100) | 19 (0.250) | 17/268 | 5.2 | 70.4% | noncoding (487/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2095893 | NA (NA) | noncoding (532/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 270329 | NA (NA) | 19 (0.250) | 17/268 | 5.2 | NA | noncoding (124/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270374 | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 3063396 | 113 (1.460) | 22 (0.300) | 15/252 | 5.3 | 17.2% | noncoding (35/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063429 | NA (NA) | noncoding (68/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 4618583 = | 100 (1.290) | 21 (0.280) | 15/256 | 5.4 | 16.7% | noncoding (72/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | 4618642 = | 114 (1.540) | noncoding (131/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 311124 | NA (NA) | 15 (0.210) | 14/242 | 5.4 | NA | coding (123/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | = 311324 | NA (NA) | coding (27/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 1087988 = | 59 (0.760) | 17 (0.220) | 15/262 | 5.6 | 22.9% | intergenic (‑243/‑344) | pgaA/ycdT | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/diguanylate cyclase, membrane‑anchored |
| ? | CP009273 | 1088109 = | 57 (0.750) | intergenic (‑364/‑223) | pgaA/ycdT | biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/diguanylate cyclase, membrane‑anchored | |||||
| * | ? | CP009273 | = 220861 | NA (NA) | 17 (0.230) | 14/254 | 5.7 | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220890 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 1390859 | NA (NA) | 15 (0.200) | 13/258 | 6.1 | 19.6% | coding (527/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 1422430 = | 64 (0.830) | noncoding (622/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270239 = | NA (NA) | 15 (0.200) | 13/258 | 6.1 | NA | noncoding (34/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270302 = | NA (NA) | noncoding (97/335 nt) | IS911 | repeat region | |||||