mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 1,157,763 | G→A | intergenic (+189/‑106) | ycfH → / → ptsG | putative metal‑dependent hydrolase YcfH/glucose‑specific PTS enzyme IIBC component |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,377,030 | G→A | Q131* (CAA→TAA) | sspA ← | stringent starvation protein A |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3486117 | 3486798 | 682 | 24 [22] | [23] 24 | crp–[yhfK] | crp,[yhfK] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 44 (0.560) | 59 (0.860) | 36/224 | 0.3 | 63.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 29 (0.420) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 43 (0.550) | 26 (0.380) | 17/224 | 2.1 | 43.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 29 (0.420) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 47 (0.600) | 25/256 | 1.4 | 48.0% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4118287 | 51 (0.650) | intergenic (‑197/‑228) | glpF/zapB | glycerol facilitator/cell division factor ZapB | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 48 (0.610) | 27/256 | 1.2 | 51.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4118284 = | 45 (0.570) | intergenic (‑194/‑231) | glpF/zapB | glycerol facilitator/cell division factor ZapB | |||||