mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,586,638 | 0 | G | C | 25.0% | 133.8 / 11.8 | 61 | E278Q (GAA→CAA) | yjjN | L‑galactonate oxidoreductase |
| * | CP009273 | 4,402,596 | 0 | T | G | 23.9% | 134.1 / 14.9 | 67 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| Marginal new junction evidence (lowest skew 10 of 243 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 311145 = | NA (NA) | 26 (0.340) | 22/256 | 3.5 | NA | coding (144/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311230 = | NA (NA) | coding (229/300 nt) | insE1 | IS3 transposase A | |||||
| * | ? | CP009273 | = 311124 | NA (NA) | 16 (0.220) | 15/242 | 4.7 | NA | coding (123/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | = 311324 | NA (NA) | coding (27/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | = 4432583 | 81 (1.010) | 17 (0.220) | 15/262 | 5.1 | 19.0% | coding (385/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | CP009273 | = 4432621 | 66 (0.840) | coding (423/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||
| * | ? | CP009273 | 269746 = | NA (NA) | 23 (0.290) | 15/264 | 5.1 | NA | noncoding (1115/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269797 = | NA (NA) | noncoding (1064/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 4398991 = | NA (NA) | 14 (0.200) | 12/238 | 5.4 | 16.3% | noncoding (22/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4399052 = | 72 (1.020) | noncoding (83/98 nt) | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP331 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 2721617 = | NA (NA) | 17 (0.220) | 13/254 | 5.5 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 223172 | 14 (0.180) | 17 (0.220) | 13/254 | 5.5 | 56.2% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 3063396 | 140 (1.750) | 14 (0.190) | 12/252 | 5.7 | 9.6% | noncoding (35/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3063429 | NA (NA) | noncoding (68/98 nt) | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | = 270331 | NA (NA) | 12 (0.160) | 12/256 | 5.8 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270426 | NA (NA) | noncoding (221/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 3985975 | 81 (1.010) | 12 (0.160) | 11/250 | 6.0 | 12.7% | coding (1463/2547 nt) | cyaA | adenylate cyclase |
| ? | CP009273 | = 3986041 | 89 (1.190) | coding (1529/2547 nt) | cyaA | adenylate cyclase | |||||