mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,178,500 | 0 | C | T | 32.1% | 117.6 / 74.7 | 94 | R1075C (CGT→TGT) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 4,173,034 | 0 | C | T | 23.2% | 167.6 / 50.8 | 83 | S621F (TCC→TTC) | rpoB | RNA polymerase, beta subunit |
| Marginal new junction evidence (lowest skew 10 of 292 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 52 (0.560) | 24 (0.280) | 21/250 | 5.1 | 32.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 52 (0.600) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 2721617 = | NA (NA) | 29 (0.330) | 21/254 | 5.2 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 377428 = | NA (NA) | 22 (0.250) | 20/258 | 5.5 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 311112 = | NA (NA) | 18 (0.220) | 18/242 | 5.6 | NA | coding (111/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311338 = | NA (NA) | coding (41/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | = 376950 | NA (NA) | 20 (0.220) | 18/258 | 6.0 | NA | coding (144/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | = 376996 | NA (NA) | coding (190/366 nt) | insC1 | IS2 repressor TnpA | |||||
| * | ? | CP009273 | 1046829 = | 90 (0.970) | 16 (0.180) | 15/258 | 6.9 | 15.0% | intergenic (‑198/‑88) | cspH/cspG | stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible |
| ? | CP009273 | 1046908 = | 94 (1.060) | intergenic (‑277/‑9) | cspH/cspG | stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible | |||||
| * | ? | CP009273 | 2864923 = | 90 (0.970) | 15 (0.170) | 14/252 | 7.1 | 15.3% | coding (217/480 nt) | ispF | 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase |
| ? | CP009273 | 2864973 = | 81 (0.930) | coding (167/480 nt) | ispF | 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase | |||||
| * | ? | CP009273 | = 2008086 | 84 (0.910) | 20 (0.230) | 14/254 | 7.1 | 18.8% | coding (1377/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein |
| ? | CP009273 | = 2008167 | 93 (1.060) | coding (1458/1659 nt) | fliF | flagellar basal‑body MS‑ring and collar protein | |||||
| * | ? | CP009273 | = 223172 | 34 (0.370) | 20 (0.230) | 14/254 | 7.1 | 38.3% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 269749 = | NA (NA) | 18 (0.200) | 13/256 | 7.5 | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269794 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||