mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 34.5% | 65.4 / 41.2 | 84 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 104,041 | 0 | G | T | 28.1% | 109.2 / 18.7 | 64 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 104,042 | 0 | A | T | 28.1% | 145.6 / 22.1 | 64 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 68,486 | 0 | T | G | 27.1% | 208.2 / 19.7 | 118 | L217V (TTG→GTG) | yabI | DedA family inner membrane protein |
| * | CP009273 | 838,652 | 0 | T | G | 26.9% | 224.6 / 23.9 | 119 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,608 | 0 | G | T | 25.8% | 117.7 / 19.7 | 66 | L135F (TTG→TTT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,178,908 | 0 | T | G | 22.8% | 189.7 / 11.4 | 92 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 3,997,395 | 0 | G | C | 21.3% | 231.4 / 17.6 | 100 | F48L (TTC→TTG) | rarD | putative chloramphenical resistance permease |
| * | CP009273 | 838,672 | 0 | G | T | 21.3% | 242.0 / 15.2 | 128 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,659 | 0 | C | G | 21.1% | 239.1 / 15.0 | 112 | A291G (GCC→GGC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,675 | 0 | C | A | 20.5% | 251.2 / 10.1 | 117 | N296K (AAC→AAA) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,404,729 | 0 | C | A | 20.4% | 182.1 / 10.8 | 88 | V35F (GTC→TTC) | yfbS | putative transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2584914 | 67 (0.670) | 5 (0.050) | 3/266 | 7.8 | 6.6% | coding (309/357 nt) | yffB | putative ArsC family reductase |
| ? | CP009273 | 2584919 = | 75 (0.750) | coding (314/357 nt) | yffB | putative ArsC family reductase | |||||
| * | ? | CP009273 | 1855788 = | 115 (1.150) | 3 (0.030) | 3/262 | 7.8 | 2.7% | intergenic (‑199/+171) | ydjL/yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein |
| ? | CP009273 | 1855803 = | 107 (1.090) | intergenic (‑214/+156) | ydjL/yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein | |||||
| * | ? | CP009273 | = 1005667 | 87 (0.870) | 3 (0.030) | 3/266 | 7.8 | 3.2% | coding (248/1908 nt) | uup | putative transporter subunit of ABC superfamily: ATP‑binding component |
| ? | CP009273 | 1005672 = | 97 (0.970) | coding (253/1908 nt) | uup | putative transporter subunit of ABC superfamily: ATP‑binding component | |||||
| * | ? | CP009273 | 270502 = | NA (NA) | 3 (0.030) | 3/264 | 7.8 | NA | noncoding (297/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270554 = | NA (NA) | noncoding (14/1221 nt) | IS30 | repeat region | |||||