mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 197 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4626778 = | 123 (1.170) | 4 (0.040) | 3/238 | NT | 3.4% | coding (266/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon |
| ? | CP009273 | 4626815 = | 107 (1.070) | coding (303/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB, regulator of the CreBC regulon | |||||
| * | ? | CP009273 | = 4622921 | 142 (1.350) | 4 (0.040) | 4/238 | NT | 2.6% | noncoding (14/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 4622971 | 159 (1.590) | noncoding (64/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | = 4616417 | 122 (1.160) | 4 (0.040) | 4/246 | NT | 3.2% | coding (689/1383 nt) | radA | DNA repair protein |
| ? | CP009273 | = 4616456 | 125 (1.210) | coding (728/1383 nt) | radA | DNA repair protein | |||||
| * | ? | CP009273 | = 4533142 | 99 (0.940) | 4 (0.040) | 4/242 | NT | 3.9% | coding (211/549 nt) | fimA | major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4533179 | 103 (1.010) | coding (248/549 nt) | fimA | major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 4513654 | 128 (1.220) | 3 (0.030) | 3/244 | NT | 2.3% | coding (258/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | = 4513696 | 127 (1.240) | coding (216/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | = 4470152 | 100 (0.950) | 4 (0.040) | 3/238 | NT | 3.8% | coding (606/1197 nt) | yjgN | DUF898 family inner membrane protein |
| ? | CP009273 | = 4470172 | 108 (1.080) | coding (626/1197 nt) | yjgN | DUF898 family inner membrane protein | |||||
| * | ? | CP009273 | = 4467007 | 79 (0.750) | 4 (0.040) | 4/238 | NT | 4.9% | coding (1754/1815 nt) | yjgL | uncharacterized protein |
| ? | CP009273 | = 4467039 | 80 (0.800) | coding (1786/1815 nt) | yjgL | uncharacterized protein | |||||
| * | ? | CP009273 | = 4462993 | 109 (1.040) | 3 (0.030) | 3/238 | NT | 2.8% | coding (34/396 nt) | yjgH | UPF0131 family protein |
| ? | CP009273 | = 4463046 | 106 (1.060) | intergenic (‑20/+111) | yjgH/bdcA | UPF0131 family protein/c‑di‑GMP‑binding biofilm dispersal mediator protein | |||||
| * | ? | CP009273 | 4354203 = | 123 (1.170) | 4 (0.040) | 4/240 | NT | 3.3% | coding (657/1698 nt) | dsbD | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein |
| ? | CP009273 | 4354266 = | 117 (1.160) | coding (594/1698 nt) | dsbD | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein | |||||
| * | ? | CP009273 | 4344180 = | 104 (0.990) | 3 (0.030) | 3/240 | NT | 3.1% | coding (355/1518 nt) | lysU | lysine tRNA synthetase, inducible |
| ? | CP009273 | 4344223 = | 89 (0.880) | coding (312/1518 nt) | lysU | lysine tRNA synthetase, inducible | |||||