mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 39.2% | 58.4 / 45.8 | 97 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 104,042 | 0 | A | T | 30.6% | 175.2 / 37.9 | 90 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 104,041 | 0 | G | T | 28.6% | 151.7 / 28.9 | 92 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 838,658 | 0 | G | T | 27.4% | 146.1 / 10.6 | 84 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,672 | 0 | G | T | 25.8% | 147.6 / 21.4 | 89 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,178,908 | 0 | T | G | 25.8% | 195.8 / 14.1 | 93 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 4,008,453 | 0 | G | T | 21.1% | 252.8 / 15.9 | 128 | D681Y (GAT→TAT) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| * | CP009273 | 3,048,245 | 0 | G | T | 20.9% | 165.5 / 11.0 | 86 | Q187K (CAA→AAA) | ygfB | UPF0149 family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3646386 | NA (NA) | 5 (0.040) | 3/262 | 8.1 | 3.6% | noncoding (205/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 3857381 | 136 (1.080) | coding (123/717 nt) | yidP | UTRA domain‑containing GntR family putative transcriptional regulator | |||||
| * | ? | CP009273 | 2130596 = | 85 (0.680) | 4 (0.030) | 3/260 | 8.1 | 3.3% | coding (129/1140 nt) | wza | colanic acid export protein; outer membrane auxillary lipoprotein |
| ? | CP009273 | = 2267714 | 151 (1.240) | coding (57/1095 nt) | yejB | microcin C transporter YejABEF, permease subunit; ABC family | |||||
| * | ? | CP009273 | = 2747586 | 110 (0.880) | 3 (0.020) | 3/264 | 8.2 | 2.9% | coding (72/291 nt) | ratB | UPF0125 family protein |
| ? | CP009273 | 3214465 = | 91 (0.740) | coding (142/333 nt) | ygjH | putative tRNA binding protein; putative tRNA corner chaperone | |||||
| * | ? | CP009273 | = 533792 | 134 (1.070) | 3 (0.020) | 3/264 | 8.2 | 2.2% | coding (704/1455 nt) | ybbW | putative allantoin transporter |
| ? | CP009273 | = 562633 | NA (NA) | coding (40/867 nt) | insF1 | IS3 transposase B | |||||