mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 38.3% | 39.0 / 44.4 | 82 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,672 | 0 | G | T | 28.7% | 135.3 / 14.6 | 80 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,178,908 | 0 | T | G | 28.6% | 173.7 / 28.3 | 98 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,652 | 0 | T | G | 27.6% | 128.3 / 15.5 | 76 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,041 | 0 | G | T | 25.4% | 115.9 / 14.1 | 63 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 4,375,475 | 0 | A | T | 25.0% | 222.8 / 15.6 | 92 | D89V (GAT→GTT) | yjeN | uncharacterized protein |
| * | CP009273 | 4,402,598 | 0 | C | G | 25.0% | 197.2 / 14.1 | 81 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,170,766 | 0 | C | A | 24.0% | 208.0 / 15.6 | 100 | intergenic (‑83/+225) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,170,746 | 0 | C | A | 23.0% | 125.3 / 19.4 | 89 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,608 | 0 | G | T | 22.1% | 186.7 / 12.0 | 86 | L135F (TTG→TTT) | yjfM | DUF1190 family protein |
| * | CP009273 | 68,486 | 0 | T | G | 21.1% | 248.8 / 10.9 | 124 | L217V (TTG→GTG) | yabI | DedA family inner membrane protein |
| * | CP009273 | 4,008,442 | 0 | T | G | 21.1% | 202.3 / 11.4 | 95 | F677C (TTT→TGT) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| * | CP009273 | 2,404,729 | 0 | C | A | 20.5% | 152.1 / 11.2 | 73 | V35F (GTC→TTC) | yfbS | putative transporter |
| * | CP009273 | 104,042 | 0 | A | T | 20.3% | 164.2 / 12.5 | 62 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 838,658 | 0 | G | T | 20.3% | 140.5 / 11.5 | 75 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3399761 = | 128 (1.240) | 3 (0.030) | 3/244 | 7.4 | 2.5% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | CP009273 | = 3399757 | 116 (1.230) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | CP009273 | 4015569 = | 75 (0.720) | 3 (0.030) | 3/264 | 7.8 | 3.2% | coding (265/270 nt) | tatA | TatABCE protein translocation system subunit |
| ? | CP009273 | = 4189485 | 108 (1.060) | coding (54/591 nt) | yjaG | DUF416 domain protein | |||||
| * | ? | CP009273 | = 3387921 | 78 (0.750) | 3 (0.030) | 3/264 | 7.8 | 3.1% | coding (1697/3801 nt) | yhdP | DUF3971‑AsmA2 domains protein |
| ? | CP009273 | 4093096 = | 113 (1.110) | coding (347/675 nt) | yiiM | 6‑N‑hydroxylaminopurine resistance protein | |||||
| * | ? | CP009273 | 544971 = | 141 (1.360) | 3 (0.030) | 3/266 | 7.8 | 2.8% | coding (1159/1260 nt) | ylbE | NO‑induced DUF1116 protein |
| ? | CP009273 | 620349 = | 71 (0.690) | coding (9/1176 nt) | entC | isochorismate synthase 1 | |||||